Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1016

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1015 and PfGW456L13_1016 overlap by 4 nucleotidesPfGW456L13_1016 and PfGW456L13_1017 are separated by 27 nucleotidesPfGW456L13_1017 and PfGW456L13_1018 are separated by 79 nucleotides PfGW456L13_1015 - Dihydroorotase (EC 3.5.2.3), at 1,126,065 to 1,127,336 _1015 PfGW456L13_1016 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 1,127,333 to 1,128,352 _1016 PfGW456L13_1017 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 1,128,380 to 1,128,883 _1017 PfGW456L13_1018 - Putative Holliday junction resolvase YggF, at 1,128,963 to 1,129,400 _1018 Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -2 -1 0 1 2at 1128.372 kb on - strandat 1128.547 kb on - strand, within PfGW456L13_1017at 1128.826 kb on - strand, within PfGW456L13_1017at 1128.936 kb on + strandat 1128.937 kb on - strandat 1128.937 kb on - strandat 1128.937 kb on - strandat 1128.937 kb on - strandat 1128.937 kb on - strandat 1128.937 kb on - strandat 1128.941 kb on - strandat 1128.941 kb on - strandat 1128.941 kb on - strandat 1129.006 kb on - strandat 1129.006 kb on - strandat 1129.006 kb on - strandat 1129.006 kb on - strandat 1129.006 kb on - strandat 1129.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,128,372 - +1.2
1,128,547 - PfGW456L13_1017 0.33 -1.3
1,128,826 - PfGW456L13_1017 0.88 -1.0
1,128,936 + -1.6
1,128,937 - +0.9
1,128,937 - +0.7
1,128,937 - -2.4
1,128,937 - -2.1
1,128,937 - +1.6
1,128,937 - +0.7
1,128,941 - +0.9
1,128,941 - +1.2
1,128,941 - -0.0
1,129,006 - +0.6
1,129,006 - -0.1
1,129,006 - +1.9
1,129,006 - -1.2
1,129,006 - +0.7
1,129,006 - +0.2

Or see this region's nucleotide sequence