Strain Fitness in Pseudomonas sp. S08-1 around OH686_13380

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_13360 and OH686_13365 are separated by 60 nucleotidesOH686_13365 and OH686_13370 overlap by 129 nucleotidesOH686_13370 and OH686_13375 overlap by 26 nucleotidesOH686_13375 and OH686_13380 are separated by 14 nucleotidesOH686_13380 and OH686_13385 are separated by 83 nucleotidesOH686_13385 and OH686_13390 are separated by 24 nucleotidesOH686_13390 and OH686_13395 are separated by 22 nucleotides OH686_13360: OH686_13360 - hypothetical protein, at 2,809,551 to 2,809,730 _13360 OH686_13365: OH686_13365 - CDS, at 2,809,791 to 2,809,955 _13365 OH686_13370: OH686_13370 - hypothetical protein' product='hypothetical protein, at 2,809,827 to 2,810,138 _13370 OH686_13375: OH686_13375 - N5-carboxyaminoimidazole ribonucleotide mutase , at 2,810,113 to 2,810,601 _13375 OH686_13380: OH686_13380 - N5-carboxyaminoimidazole ribonucleotide synthase , at 2,810,616 to 2,811,698 _13380 OH686_13385: OH686_13385 - Predicted membrane protein, at 2,811,782 to 2,812,027 _13385 OH686_13390: OH686_13390 - putative lipoprotein, at 2,812,052 to 2,812,612 _13390 OH686_13395: OH686_13395 - Aldose 1-epimerase family protein YeaD, at 2,812,635 to 2,813,534 _13395 Position (kb) 2810 2811 2812Strain fitness (log2 ratio) -2 -1 0 1 2at 2809.730 kb on + strandat 2809.730 kb on + strandat 2809.731 kb on - strandat 2809.731 kb on - strandat 2809.731 kb on - strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.773 kb on + strandat 2809.774 kb on - strandat 2809.774 kb on - strandat 2809.883 kb on - strandat 2809.902 kb on - strandat 2809.929 kb on + strandat 2809.930 kb on - strandat 2809.940 kb on + strandat 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2809.999 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.040 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.100 kb on + strand, within OH686_13370at 2810.611 kb on + strandat 2810.611 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2810.613 kb on + strandat 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.914 kb on + strand, within OH686_13385at 2811.915 kb on - strand, within OH686_13385at 2811.915 kb on - strand, within OH686_13385at 2811.915 kb on - strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.938 kb on + strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2811.939 kb on - strand, within OH686_13385at 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.004 kb on + strandat 2812.005 kb on - strandat 2812.005 kb on - strandat 2812.005 kb on - strandat 2812.005 kb on - strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.030 kb on + strandat 2812.031 kb on - strandat 2812.031 kb on - strandat 2812.031 kb on - strandat 2812.031 kb on - strandat 2812.031 kb on - strandat 2812.067 kb on + strandat 2812.067 kb on + strandat 2812.067 kb on + strandat 2812.067 kb on + strandat 2812.067 kb on + strandat 2812.068 kb on - strandat 2812.068 kb on - strandat 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.289 kb on + strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.290 kb on - strand, within OH686_13390at 2812.464 kb on - strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.493 kb on + strand, within OH686_13390at 2812.494 kb on - strand, within OH686_13390at 2812.494 kb on - strand, within OH686_13390at 2812.494 kb on - strand, within OH686_13390at 2812.494 kb on - strand, within OH686_13390at 2812.494 kb on - strand, within OH686_13390at 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.562 kb on + strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strandat 2812.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,809,730 + -0.1
2,809,730 + -0.4
2,809,731 - -0.9
2,809,731 - -1.5
2,809,731 - -0.4
2,809,773 + +0.4
2,809,773 + -0.2
2,809,773 + -1.3
2,809,773 + +1.4
2,809,773 + +1.2
2,809,774 - +0.1
2,809,774 - +0.5
2,809,883 - +1.2
2,809,902 - +0.0
2,809,929 + -0.5
2,809,930 - +0.3
2,809,940 + +0.7
2,809,999 + OH686_13370 0.55 -0.1
2,809,999 + OH686_13370 0.55 -2.5
2,809,999 + OH686_13370 0.55 +1.0
2,809,999 + OH686_13370 0.55 +0.8
2,809,999 + OH686_13370 0.55 -0.4
2,809,999 + OH686_13370 0.55 -0.4
2,809,999 + OH686_13370 0.55 +0.1
2,809,999 + OH686_13370 0.55 +0.6
2,809,999 + OH686_13370 0.55 -0.1
2,809,999 + OH686_13370 0.55 +0.1
2,809,999 + OH686_13370 0.55 -0.4
2,810,040 + OH686_13370 0.68 +0.6
2,810,040 + OH686_13370 0.68 +0.3
2,810,040 + OH686_13370 0.68 +0.1
2,810,040 + OH686_13370 0.68 +0.1
2,810,040 + OH686_13370 0.68 -0.3
2,810,040 + OH686_13370 0.68 +0.3
2,810,040 + OH686_13370 0.68 +0.0
2,810,040 + OH686_13370 0.68 +0.6
2,810,040 + OH686_13370 0.68 +0.6
2,810,100 + OH686_13370 0.88 -0.2
2,810,100 + OH686_13370 0.88 -0.0
2,810,100 + OH686_13370 0.88 +0.1
2,810,100 + OH686_13370 0.88 -0.7
2,810,100 + OH686_13370 0.88 +0.1
2,810,100 + OH686_13370 0.88 +0.2
2,810,100 + OH686_13370 0.88 -1.1
2,810,611 + -0.2
2,810,611 + -1.0
2,810,613 + +0.4
2,810,613 + +2.5
2,810,613 + -0.4
2,810,613 + +0.6
2,810,613 + -0.3
2,810,613 + +0.6
2,810,613 + -0.1
2,810,613 + +0.4
2,810,613 + +0.2
2,810,613 + +0.5
2,810,613 + -0.4
2,810,613 + -0.0
2,810,613 + +0.2
2,810,613 + +0.8
2,810,613 + +0.6
2,810,613 + -0.5
2,810,613 + -0.5
2,811,914 + OH686_13385 0.54 +0.7
2,811,914 + OH686_13385 0.54 -0.6
2,811,914 + OH686_13385 0.54 -1.0
2,811,914 + OH686_13385 0.54 +0.3
2,811,914 + OH686_13385 0.54 +0.2
2,811,914 + OH686_13385 0.54 +1.1
2,811,914 + OH686_13385 0.54 -0.2
2,811,914 + OH686_13385 0.54 -0.1
2,811,915 - OH686_13385 0.54 +0.7
2,811,915 - OH686_13385 0.54 -1.9
2,811,915 - OH686_13385 0.54 +0.5
2,811,938 + OH686_13385 0.63 +1.2
2,811,938 + OH686_13385 0.63 +0.1
2,811,938 + OH686_13385 0.63 +0.7
2,811,938 + OH686_13385 0.63 +1.0
2,811,938 + OH686_13385 0.63 -1.1
2,811,938 + OH686_13385 0.63 -0.6
2,811,938 + OH686_13385 0.63 +0.2
2,811,938 + OH686_13385 0.63 +0.3
2,811,939 - OH686_13385 0.64 -0.2
2,811,939 - OH686_13385 0.64 +1.4
2,811,939 - OH686_13385 0.64 -0.2
2,811,939 - OH686_13385 0.64 +0.2
2,811,939 - OH686_13385 0.64 -0.6
2,811,939 - OH686_13385 0.64 +0.1
2,811,939 - OH686_13385 0.64 +0.2
2,811,939 - OH686_13385 0.64 +0.1
2,812,004 + -0.9
2,812,004 + -1.1
2,812,004 + -1.2
2,812,004 + +0.0
2,812,004 + -0.7
2,812,004 + +1.8
2,812,004 + -0.2
2,812,004 + -0.4
2,812,004 + -0.7
2,812,005 - -0.8
2,812,005 - +1.2
2,812,005 - -0.1
2,812,005 - -0.1
2,812,030 + +0.3
2,812,030 + +1.2
2,812,030 + -0.8
2,812,030 + +0.3
2,812,030 + +0.2
2,812,030 + -0.3
2,812,030 + +1.0
2,812,030 + -0.3
2,812,030 + +0.1
2,812,031 - +0.3
2,812,031 - -0.5
2,812,031 - +0.3
2,812,031 - -0.1
2,812,031 - +0.5
2,812,067 + -1.2
2,812,067 + +0.2
2,812,067 + -0.1
2,812,067 + -0.1
2,812,067 + +0.2
2,812,068 - +1.4
2,812,068 - +0.1
2,812,289 + OH686_13390 0.42 -0.6
2,812,289 + OH686_13390 0.42 -0.4
2,812,289 + OH686_13390 0.42 -1.9
2,812,289 + OH686_13390 0.42 -0.1
2,812,289 + OH686_13390 0.42 +0.6
2,812,289 + OH686_13390 0.42 -0.0
2,812,289 + OH686_13390 0.42 +1.0
2,812,289 + OH686_13390 0.42 -0.8
2,812,289 + OH686_13390 0.42 +0.5
2,812,290 - OH686_13390 0.42 +0.3
2,812,290 - OH686_13390 0.42 -0.5
2,812,290 - OH686_13390 0.42 +1.2
2,812,290 - OH686_13390 0.42 -0.9
2,812,290 - OH686_13390 0.42 +0.1
2,812,290 - OH686_13390 0.42 -0.1
2,812,290 - OH686_13390 0.42 +0.2
2,812,290 - OH686_13390 0.42 +0.2
2,812,464 - OH686_13390 0.73 -1.3
2,812,493 + OH686_13390 0.79 +0.3
2,812,493 + OH686_13390 0.79 -0.1
2,812,493 + OH686_13390 0.79 -0.5
2,812,493 + OH686_13390 0.79 -0.2
2,812,493 + OH686_13390 0.79 +0.5
2,812,493 + OH686_13390 0.79 +0.2
2,812,493 + OH686_13390 0.79 +0.3
2,812,493 + OH686_13390 0.79 +0.1
2,812,493 + OH686_13390 0.79 -1.1
2,812,493 + OH686_13390 0.79 -0.5
2,812,493 + OH686_13390 0.79 -0.3
2,812,493 + OH686_13390 0.79 +0.2
2,812,493 + OH686_13390 0.79 -0.1
2,812,493 + OH686_13390 0.79 -1.5
2,812,493 + OH686_13390 0.79 -0.5
2,812,494 - OH686_13390 0.79 +0.9
2,812,494 - OH686_13390 0.79 -0.1
2,812,494 - OH686_13390 0.79 -0.5
2,812,494 - OH686_13390 0.79 -0.5
2,812,494 - OH686_13390 0.79 -0.7
2,812,562 + -1.1
2,812,562 + +0.7
2,812,562 + -0.3
2,812,562 + -0.3
2,812,562 + -0.5
2,812,562 + -0.1
2,812,562 + -0.9
2,812,563 - +0.6
2,812,563 - -1.6
2,812,563 - -0.4
2,812,563 - -0.0
2,812,563 - -1.6
2,812,563 - +0.2
2,812,563 - +0.9
2,812,563 - +0.9
2,812,563 - +0.9

Or see this region's nucleotide sequence