Strain Fitness in Pseudomonas sp. S08-1 around OH686_01635

Experiment: acetate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_01625 and OH686_01630 are separated by 140 nucleotidesOH686_01630 and OH686_01635 are separated by 89 nucleotidesOH686_01635 and OH686_01640 are separated by 2 nucleotidesOH686_01640 and OH686_01645 are separated by 55 nucleotides OH686_01625: OH686_01625 - Nonspecific porin and structural outer membrane protein OprF, at 351,267 to 352,229 _01625 OH686_01630: OH686_01630 - RNA polymerase sigma factor SigX, at 352,370 to 352,960 _01630 OH686_01635: OH686_01635 - CmpX, at 353,050 to 353,874 _01635 OH686_01640: OH686_01640 - CrfX protein, at 353,877 to 354,113 _01640 OH686_01645: OH686_01645 - Magnesium and cobalt transport protein CorA, at 354,169 to 355,149 _01645 Position (kb) 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 352.234 kb on - strandat 352.256 kb on - strandat 352.258 kb on + strandat 352.258 kb on + strandat 352.258 kb on + strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.259 kb on - strandat 352.351 kb on + strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.029 kb on - strandat 353.034 kb on - strandat 353.034 kb on - strandat 353.082 kb on + strandat 353.198 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.213 kb on + strand, within OH686_01635at 353.411 kb on + strand, within OH686_01635at 353.411 kb on + strand, within OH686_01635at 353.520 kb on - strand, within OH686_01635at 353.596 kb on + strand, within OH686_01635at 353.596 kb on + strand, within OH686_01635at 353.596 kb on + strand, within OH686_01635at 353.596 kb on + strand, within OH686_01635at 353.597 kb on - strand, within OH686_01635at 353.597 kb on - strand, within OH686_01635at 353.609 kb on + strand, within OH686_01635at 353.609 kb on + strand, within OH686_01635at 353.776 kb on + strand, within OH686_01635at 353.874 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.109 kb on + strandat 354.117 kb on + strandat 354.117 kb on + strandat 354.117 kb on + strandat 354.117 kb on + strandat 354.117 kb on + strandat 354.117 kb on + strandat 354.118 kb on - strandat 354.139 kb on + strandat 354.170 kb on + strandat 354.170 kb on + strandat 354.241 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.251 kb on + strandat 354.252 kb on - strandat 354.252 kb on - strandat 354.252 kb on - strandat 354.252 kb on - strandat 354.252 kb on - strandat 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.350 kb on + strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.351 kb on - strand, within OH686_01645at 354.443 kb on + strand, within OH686_01645at 354.492 kb on - strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.515 kb on + strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.516 kb on - strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.686 kb on + strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.687 kb on - strand, within OH686_01645at 354.794 kb on - strand, within OH686_01645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
remove
352,234 - +0.1
352,256 - +0.1
352,258 + -0.7
352,258 + +0.1
352,258 + -0.7
352,259 - +0.1
352,259 - +1.3
352,259 - -0.1
352,259 - +0.5
352,259 - +0.6
352,259 - -0.1
352,259 - +0.7
352,259 - -0.2
352,259 - -0.0
352,259 - +0.1
352,259 - -0.8
352,351 + -0.0
353,029 - -0.0
353,029 - -0.2
353,029 - -2.5
353,029 - +1.4
353,029 - +1.3
353,029 - +0.8
353,029 - +0.4
353,034 - +0.2
353,034 - -2.8
353,082 + +0.1
353,198 + OH686_01635 0.18 +1.8
353,213 + OH686_01635 0.20 +0.5
353,213 + OH686_01635 0.20 -0.7
353,213 + OH686_01635 0.20 -1.0
353,213 + OH686_01635 0.20 +0.5
353,213 + OH686_01635 0.20 -0.5
353,213 + OH686_01635 0.20 +0.1
353,213 + OH686_01635 0.20 +0.5
353,213 + OH686_01635 0.20 -1.2
353,213 + OH686_01635 0.20 +0.1
353,213 + OH686_01635 0.20 -1.8
353,213 + OH686_01635 0.20 +0.1
353,213 + OH686_01635 0.20 -0.5
353,213 + OH686_01635 0.20 -1.5
353,213 + OH686_01635 0.20 -2.0
353,213 + OH686_01635 0.20 +0.8
353,213 + OH686_01635 0.20 -0.9
353,411 + OH686_01635 0.44 -0.3
353,411 + OH686_01635 0.44 -0.7
353,520 - OH686_01635 0.57 +0.8
353,596 + OH686_01635 0.66 +0.1
353,596 + OH686_01635 0.66 +0.1
353,596 + OH686_01635 0.66 -1.0
353,596 + OH686_01635 0.66 -1.2
353,597 - OH686_01635 0.66 +0.1
353,597 - OH686_01635 0.66 -0.3
353,609 + OH686_01635 0.68 -0.5
353,609 + OH686_01635 0.68 -0.0
353,776 + OH686_01635 0.88 -1.0
353,874 + -0.0
354,109 + -1.6
354,109 + -0.4
354,109 + -1.1
354,109 + -0.2
354,109 + -1.4
354,109 + -1.5
354,109 + -1.0
354,109 + +0.4
354,117 + +0.4
354,117 + +0.7
354,117 + -0.6
354,117 + -0.5
354,117 + -0.4
354,117 + -0.7
354,118 - +1.1
354,139 + +1.3
354,170 + +0.2
354,170 + +0.7
354,241 + +0.2
354,251 + +1.5
354,251 + +0.2
354,251 + -0.3
354,251 + +0.8
354,251 + +0.1
354,251 + +0.9
354,251 + +0.1
354,251 + +1.2
354,252 - +1.9
354,252 - -0.1
354,252 - +0.8
354,252 - -0.8
354,252 - -1.3
354,350 + OH686_01645 0.18 +0.2
354,350 + OH686_01645 0.18 +0.3
354,350 + OH686_01645 0.18 +0.1
354,350 + OH686_01645 0.18 +0.6
354,350 + OH686_01645 0.18 -0.2
354,350 + OH686_01645 0.18 -0.5
354,350 + OH686_01645 0.18 -0.4
354,350 + OH686_01645 0.18 +0.3
354,350 + OH686_01645 0.18 -0.8
354,350 + OH686_01645 0.18 -0.3
354,350 + OH686_01645 0.18 -1.0
354,350 + OH686_01645 0.18 +0.9
354,351 - OH686_01645 0.19 -0.9
354,351 - OH686_01645 0.19 -0.4
354,351 - OH686_01645 0.19 -0.3
354,351 - OH686_01645 0.19 +0.1
354,351 - OH686_01645 0.19 -1.2
354,351 - OH686_01645 0.19 -0.6
354,351 - OH686_01645 0.19 -0.9
354,351 - OH686_01645 0.19 +0.8
354,443 + OH686_01645 0.28 +1.0
354,492 - OH686_01645 0.33 +0.5
354,515 + OH686_01645 0.35 -0.0
354,515 + OH686_01645 0.35 -1.2
354,515 + OH686_01645 0.35 -0.6
354,515 + OH686_01645 0.35 +0.4
354,515 + OH686_01645 0.35 +0.4
354,515 + OH686_01645 0.35 -0.2
354,515 + OH686_01645 0.35 +0.5
354,515 + OH686_01645 0.35 -0.3
354,515 + OH686_01645 0.35 +0.1
354,515 + OH686_01645 0.35 +0.1
354,515 + OH686_01645 0.35 +1.8
354,515 + OH686_01645 0.35 -1.0
354,515 + OH686_01645 0.35 -0.5
354,515 + OH686_01645 0.35 -0.6
354,515 + OH686_01645 0.35 -0.0
354,515 + OH686_01645 0.35 -0.7
354,515 + OH686_01645 0.35 -0.7
354,515 + OH686_01645 0.35 -1.1
354,515 + OH686_01645 0.35 +1.5
354,515 + OH686_01645 0.35 -0.1
354,515 + OH686_01645 0.35 -0.5
354,515 + OH686_01645 0.35 +0.3
354,515 + OH686_01645 0.35 +0.1
354,515 + OH686_01645 0.35 -0.0
354,516 - OH686_01645 0.35 +0.1
354,516 - OH686_01645 0.35 +0.3
354,516 - OH686_01645 0.35 -1.6
354,516 - OH686_01645 0.35 +0.9
354,516 - OH686_01645 0.35 +1.2
354,516 - OH686_01645 0.35 +1.4
354,516 - OH686_01645 0.35 -0.9
354,516 - OH686_01645 0.35 +1.2
354,516 - OH686_01645 0.35 +1.1
354,516 - OH686_01645 0.35 -0.2
354,516 - OH686_01645 0.35 -0.5
354,516 - OH686_01645 0.35 +0.4
354,516 - OH686_01645 0.35 -0.1
354,516 - OH686_01645 0.35 +0.9
354,516 - OH686_01645 0.35 -0.7
354,516 - OH686_01645 0.35 +0.5
354,516 - OH686_01645 0.35 -0.7
354,516 - OH686_01645 0.35 +0.7
354,516 - OH686_01645 0.35 -0.5
354,516 - OH686_01645 0.35 -0.5
354,516 - OH686_01645 0.35 -0.3
354,516 - OH686_01645 0.35 +0.0
354,686 + OH686_01645 0.53 -0.0
354,686 + OH686_01645 0.53 -0.8
354,686 + OH686_01645 0.53 +0.5
354,686 + OH686_01645 0.53 +0.3
354,686 + OH686_01645 0.53 +0.3
354,686 + OH686_01645 0.53 +0.6
354,687 - OH686_01645 0.53 -0.1
354,687 - OH686_01645 0.53 +0.9
354,687 - OH686_01645 0.53 +0.4
354,687 - OH686_01645 0.53 +1.7
354,687 - OH686_01645 0.53 +0.5
354,687 - OH686_01645 0.53 -0.7
354,794 - OH686_01645 0.64 -0.2

Or see this region's nucleotide sequence