Experiment: Chlorite 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18055 and PS417_18060 overlap by 4 nucleotides PS417_18060 and PS417_18065 overlap by 4 nucleotides PS417_18065 and PS417_18070 overlap by 4 nucleotides PS417_18070 and PS417_18075 are separated by 7 nucleotides PS417_18075 and PS417_18080 are separated by 13 nucleotides
PS417_18055: PS417_18055 - general secretion pathway protein GspK, at 3,934,509 to 3,935,210
_18055
PS417_18060: PS417_18060 - general secretion pathway protein GspJ, at 3,935,207 to 3,935,776
_18060
PS417_18065: PS417_18065 - general secretion pathway protein GspI, at 3,935,773 to 3,936,105
_18065
PS417_18070: PS417_18070 - general secretion pathway protein GspH, at 3,936,102 to 3,936,527
_18070
PS417_18075: PS417_18075 - general secretion pathway protein GspG, at 3,936,535 to 3,936,924
_18075
PS417_18080: PS417_18080 - general secretion pathway protein GspF, at 3,936,938 to 3,938,134
_18080
Position (kb)
3936
3937 Strain fitness (log2 ratio)
-1
0
1 at 3935.646 kb on + strand, within PS417_18060 at 3935.646 kb on + strand, within PS417_18060 at 3935.730 kb on - strand at 3935.752 kb on + strand at 3936.214 kb on + strand, within PS417_18070 at 3936.215 kb on - strand at 3936.510 kb on - strand at 3936.596 kb on + strand, within PS417_18075 at 3936.597 kb on - strand, within PS417_18075 at 3936.686 kb on + strand, within PS417_18075 at 3936.687 kb on - strand, within PS417_18075 at 3936.715 kb on + strand, within PS417_18075 at 3936.716 kb on - strand, within PS417_18075 at 3936.716 kb on - strand, within PS417_18075 at 3936.801 kb on - strand, within PS417_18075 at 3936.801 kb on - strand, within PS417_18075 at 3936.941 kb on + strand at 3936.941 kb on + strand at 3936.942 kb on - strand at 3936.943 kb on + strand at 3936.944 kb on - strand at 3936.944 kb on - strand at 3937.399 kb on - strand, within PS417_18080
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 4 mM remove 3,935,646 + PS417_18060 0.77 -0.2 3,935,646 + PS417_18060 0.77 -0.3 3,935,730 - -0.2 3,935,752 + +0.5 3,936,214 + PS417_18070 0.26 +0.3 3,936,215 - -0.2 3,936,510 - -0.5 3,936,596 + PS417_18075 0.16 -0.1 3,936,597 - PS417_18075 0.16 -0.2 3,936,686 + PS417_18075 0.39 +1.0 3,936,687 - PS417_18075 0.39 -0.3 3,936,715 + PS417_18075 0.46 +0.4 3,936,716 - PS417_18075 0.46 +0.4 3,936,716 - PS417_18075 0.46 +0.8 3,936,801 - PS417_18075 0.68 -0.1 3,936,801 - PS417_18075 0.68 +0.0 3,936,941 + +0.6 3,936,941 + -0.5 3,936,942 - -0.6 3,936,943 + +0.2 3,936,944 - -0.0 3,936,944 - -0.0 3,937,399 - PS417_18080 0.39 +0.1
Or see this region's nucleotide sequence