Strain Fitness in Pseudomonas simiae WCS417 around PS417_14130

Experiment: Chlorite 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14125 and PS417_14130 are separated by 77 nucleotidesPS417_14130 and PS417_14135 are separated by 124 nucleotides PS417_14125: PS417_14125 - molybdenum ABC transporter ATP-binding protein, at 3,098,178 to 3,099,257 _14125 PS417_14130: PS417_14130 - DNA topoisomerase, at 3,099,335 to 3,100,372 _14130 PS417_14135: PS417_14135 - ABC transporter ATP-binding protein, at 3,100,497 to 3,102,119 _14135 Position (kb) 3099 3100 3101Strain fitness (log2 ratio) -2 -1 0 1at 3098.340 kb on - strand, within PS417_14125at 3098.415 kb on + strand, within PS417_14125at 3098.697 kb on + strand, within PS417_14125at 3098.739 kb on + strand, within PS417_14125at 3098.740 kb on - strand, within PS417_14125at 3098.884 kb on + strandat 3099.303 kb on - strandat 3099.368 kb on + strandat 3099.368 kb on + strandat 3099.369 kb on - strandat 3099.409 kb on - strandat 3099.425 kb on + strandat 3099.514 kb on - strand, within PS417_14130at 3099.626 kb on + strand, within PS417_14130at 3099.626 kb on + strand, within PS417_14130at 3099.780 kb on - strand, within PS417_14130at 3099.801 kb on - strand, within PS417_14130at 3100.022 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.214 kb on + strand, within PS417_14130at 3100.215 kb on - strand, within PS417_14130at 3100.420 kb on + strandat 3100.420 kb on + strandat 3100.421 kb on - strandat 3100.421 kb on - strandat 3100.715 kb on + strand, within PS417_14135at 3100.716 kb on - strand, within PS417_14135at 3100.716 kb on - strand, within PS417_14135at 3100.716 kb on - strand, within PS417_14135at 3100.719 kb on + strand, within PS417_14135at 3100.719 kb on + strand, within PS417_14135at 3100.720 kb on - strand, within PS417_14135at 3100.720 kb on - strand, within PS417_14135at 3100.720 kb on - strand, within PS417_14135at 3100.720 kb on - strand, within PS417_14135at 3100.720 kb on - strand, within PS417_14135at 3101.166 kb on + strand, within PS417_14135at 3101.166 kb on + strand, within PS417_14135at 3101.167 kb on - strand, within PS417_14135at 3101.178 kb on + strand, within PS417_14135at 3101.178 kb on + strand, within PS417_14135at 3101.178 kb on + strand, within PS417_14135at 3101.178 kb on + strand, within PS417_14135

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 4 mM
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3,098,340 - PS417_14125 0.15 +0.5
3,098,415 + PS417_14125 0.22 +0.6
3,098,697 + PS417_14125 0.48 +1.2
3,098,739 + PS417_14125 0.52 +0.7
3,098,740 - PS417_14125 0.52 +0.3
3,098,884 + +1.4
3,099,303 - -0.9
3,099,368 + +0.2
3,099,368 + +0.1
3,099,369 - +1.3
3,099,409 - -1.9
3,099,425 + +1.4
3,099,514 - PS417_14130 0.17 +0.1
3,099,626 + PS417_14130 0.28 -0.3
3,099,626 + PS417_14130 0.28 -0.6
3,099,780 - PS417_14130 0.43 +0.1
3,099,801 - PS417_14130 0.45 +0.2
3,100,022 + PS417_14130 0.66 +0.1
3,100,214 + PS417_14130 0.85 -0.1
3,100,214 + PS417_14130 0.85 -0.1
3,100,214 + PS417_14130 0.85 -0.5
3,100,215 - PS417_14130 0.85 +0.1
3,100,420 + +0.7
3,100,420 + -0.1
3,100,421 - +0.3
3,100,421 - +0.8
3,100,715 + PS417_14135 0.13 +0.5
3,100,716 - PS417_14135 0.13 -0.7
3,100,716 - PS417_14135 0.13 +0.4
3,100,716 - PS417_14135 0.13 +0.7
3,100,719 + PS417_14135 0.14 -0.0
3,100,719 + PS417_14135 0.14 -0.1
3,100,720 - PS417_14135 0.14 -0.8
3,100,720 - PS417_14135 0.14 +0.2
3,100,720 - PS417_14135 0.14 -0.4
3,100,720 - PS417_14135 0.14 +0.1
3,100,720 - PS417_14135 0.14 -0.4
3,101,166 + PS417_14135 0.41 +0.2
3,101,166 + PS417_14135 0.41 -0.1
3,101,167 - PS417_14135 0.41 -0.9
3,101,178 + PS417_14135 0.42 -0.2
3,101,178 + PS417_14135 0.42 -0.3
3,101,178 + PS417_14135 0.42 -0.2
3,101,178 + PS417_14135 0.42 +0.5

Or see this region's nucleotide sequence