Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4451 and EX28DRAFT_4452 are separated by 144 nucleotides EX28DRAFT_4452 and EX28DRAFT_4453 are separated by 345 nucleotides
EX28DRAFT_4451: EX28DRAFT_4451 - Superfamily II DNA and RNA helicases, at 17,181 to 18,449
_4451
EX28DRAFT_4452: EX28DRAFT_4452 - thioredoxin, at 18,594 to 18,923
_4452
EX28DRAFT_4453: EX28DRAFT_4453 - transcription termination factor Rho, at 19,269 to 20,528
_4453
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.793 kb on + strand, within EX28DRAFT_4451 at 17.921 kb on + strand, within EX28DRAFT_4451 at 18.183 kb on - strand, within EX28DRAFT_4451 at 18.238 kb on - strand, within EX28DRAFT_4451 at 18.450 kb on - strand at 18.457 kb on + strand at 18.470 kb on + strand at 18.470 kb on + strand at 18.471 kb on - strand at 18.516 kb on + strand at 18.576 kb on - strand at 18.590 kb on - strand at 18.591 kb on + strand at 18.591 kb on + strand at 18.592 kb on - strand at 18.593 kb on + strand at 18.593 kb on + strand at 18.594 kb on - strand at 18.644 kb on - strand, within EX28DRAFT_4452 at 18.647 kb on + strand, within EX28DRAFT_4452 at 18.805 kb on - strand, within EX28DRAFT_4452 at 19.005 kb on + strand at 19.018 kb on + strand at 19.018 kb on + strand at 19.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 17,793 + EX28DRAFT_4451 0.48 -0.2 17,921 + EX28DRAFT_4451 0.58 -0.2 18,183 - EX28DRAFT_4451 0.79 +0.1 18,238 - EX28DRAFT_4451 0.83 -1.2 18,450 - +1.1 18,457 + -0.3 18,470 + +0.1 18,470 + +0.3 18,471 - -0.1 18,516 + +0.2 18,576 - -2.8 18,590 - -2.2 18,591 + -0.8 18,591 + +0.3 18,592 - -0.3 18,593 + -0.7 18,593 + -0.4 18,594 - -3.1 18,644 - EX28DRAFT_4452 0.15 -1.7 18,647 + EX28DRAFT_4452 0.16 +0.2 18,805 - EX28DRAFT_4452 0.64 -2.9 19,005 + -0.4 19,018 + -0.1 19,018 + -0.3 19,024 + -0.6
Or see this region's nucleotide sequence