Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4296

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4295 and EX28DRAFT_4296 are separated by 251 nucleotidesEX28DRAFT_4296 and EX28DRAFT_4297 overlap by 14 nucleotidesEX28DRAFT_4297 and EX28DRAFT_4298 are separated by 2 nucleotides EX28DRAFT_4295: EX28DRAFT_4295 - alternative sigma factor RpoH, at 98,851 to 99,708 _4295 EX28DRAFT_4296: EX28DRAFT_4296 - putative protein insertion permease FtsX, at 99,960 to 101,015 _4296 EX28DRAFT_4297: EX28DRAFT_4297 - cell division ATP-binding protein FtsE, at 101,002 to 101,673 _4297 EX28DRAFT_4298: EX28DRAFT_4298 - signal recognition particle-docking protein FtsY, at 101,676 to 103,136 _4298 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -2 -1 0 1at 99.945 kb on + strandat 99.946 kb on - strandat 99.961 kb on + strandat 99.971 kb on + strandat 100.559 kb on + strand, within EX28DRAFT_4296at 100.594 kb on + strand, within EX28DRAFT_4296at 100.595 kb on - strand, within EX28DRAFT_4296at 100.670 kb on + strand, within EX28DRAFT_4296at 100.677 kb on - strand, within EX28DRAFT_4296at 101.104 kb on + strand, within EX28DRAFT_4297at 101.532 kb on + strand, within EX28DRAFT_4297at 101.643 kb on - strandat 101.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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99,945 + -0.3
99,946 - -1.9
99,961 + +0.2
99,971 + +0.5
100,559 + EX28DRAFT_4296 0.57 -1.1
100,594 + EX28DRAFT_4296 0.60 -1.6
100,595 - EX28DRAFT_4296 0.60 -1.0
100,670 + EX28DRAFT_4296 0.67 -1.9
100,677 - EX28DRAFT_4296 0.68 -1.6
101,104 + EX28DRAFT_4297 0.15 -1.3
101,532 + EX28DRAFT_4297 0.79 -2.5
101,643 - -2.3
101,678 - +0.9

Or see this region's nucleotide sequence