Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4243

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4241 and EX28DRAFT_4242 are separated by 98 nucleotidesEX28DRAFT_4242 and EX28DRAFT_4243 are separated by 6 nucleotidesEX28DRAFT_4243 and EX28DRAFT_4244 are separated by 646 nucleotidesEX28DRAFT_4244 and EX28DRAFT_4245 are separated by 61 nucleotides EX28DRAFT_4241: EX28DRAFT_4241 - redox-sensitive transcriptional activator SoxR, at 48,356 to 48,814 _4241 EX28DRAFT_4242: EX28DRAFT_4242 - AraC-type DNA-binding domain-containing proteins, at 48,913 to 49,239 _4242 EX28DRAFT_4243: EX28DRAFT_4243 - Predicted signal transduction protein containing sensor and EAL domains, at 49,246 to 50,811 _4243 EX28DRAFT_4244: EX28DRAFT_4244 - hypothetical protein, at 51,458 to 51,739 _4244 EX28DRAFT_4245: EX28DRAFT_4245 - single stranded DNA-binding protein (ssb), at 51,801 to 52,331 _4245 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3at 48.268 kb on + strandat 48.269 kb on - strandat 48.308 kb on + strandat 48.320 kb on + strandat 48.321 kb on - strandat 48.321 kb on - strandat 48.321 kb on - strandat 48.328 kb on + strandat 48.328 kb on + strandat 48.328 kb on + strandat 48.329 kb on - strandat 48.331 kb on - strandat 48.331 kb on - strandat 48.457 kb on + strand, within EX28DRAFT_4241at 48.458 kb on - strand, within EX28DRAFT_4241at 48.493 kb on + strand, within EX28DRAFT_4241at 48.494 kb on - strand, within EX28DRAFT_4241at 48.499 kb on + strand, within EX28DRAFT_4241at 48.703 kb on + strand, within EX28DRAFT_4241at 48.703 kb on + strand, within EX28DRAFT_4241at 48.704 kb on - strand, within EX28DRAFT_4241at 48.724 kb on - strand, within EX28DRAFT_4241at 48.790 kb on + strandat 48.836 kb on - strandat 48.878 kb on - strandat 48.886 kb on + strandat 48.887 kb on - strandat 48.892 kb on + strandat 48.892 kb on + strandat 48.897 kb on - strandat 48.912 kb on + strandat 48.912 kb on + strandat 48.912 kb on + strandat 48.913 kb on - strandat 48.930 kb on + strandat 48.943 kb on - strandat 48.964 kb on - strand, within EX28DRAFT_4242at 48.964 kb on - strand, within EX28DRAFT_4242at 48.996 kb on + strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.157 kb on - strand, within EX28DRAFT_4242at 49.369 kb on + strandat 49.419 kb on + strand, within EX28DRAFT_4243at 49.419 kb on + strand, within EX28DRAFT_4243at 49.636 kb on + strand, within EX28DRAFT_4243at 49.637 kb on - strand, within EX28DRAFT_4243at 49.637 kb on - strand, within EX28DRAFT_4243at 49.741 kb on - strand, within EX28DRAFT_4243at 49.741 kb on - strand, within EX28DRAFT_4243at 49.742 kb on + strand, within EX28DRAFT_4243at 49.742 kb on + strand, within EX28DRAFT_4243at 49.743 kb on - strand, within EX28DRAFT_4243at 49.802 kb on + strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.930 kb on - strand, within EX28DRAFT_4243at 49.930 kb on - strand, within EX28DRAFT_4243at 49.939 kb on - strand, within EX28DRAFT_4243at 50.043 kb on + strand, within EX28DRAFT_4243at 50.044 kb on - strand, within EX28DRAFT_4243at 50.163 kb on - strand, within EX28DRAFT_4243at 50.172 kb on - strand, within EX28DRAFT_4243at 50.282 kb on + strand, within EX28DRAFT_4243at 50.283 kb on - strand, within EX28DRAFT_4243at 50.371 kb on - strand, within EX28DRAFT_4243at 50.371 kb on - strand, within EX28DRAFT_4243at 50.372 kb on + strand, within EX28DRAFT_4243at 50.372 kb on + strand, within EX28DRAFT_4243at 50.373 kb on - strand, within EX28DRAFT_4243at 50.373 kb on - strand, within EX28DRAFT_4243at 50.383 kb on - strand, within EX28DRAFT_4243at 50.384 kb on + strand, within EX28DRAFT_4243at 50.445 kb on - strand, within EX28DRAFT_4243at 50.565 kb on + strand, within EX28DRAFT_4243at 50.565 kb on + strand, within EX28DRAFT_4243at 50.565 kb on + strand, within EX28DRAFT_4243at 50.567 kb on + strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.568 kb on - strand, within EX28DRAFT_4243at 50.687 kb on - strandat 50.754 kb on + strandat 50.754 kb on + strandat 50.755 kb on - strandat 50.758 kb on + strandat 50.758 kb on + strandat 50.758 kb on + strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.759 kb on - strandat 50.774 kb on - strandat 50.821 kb on + strandat 50.846 kb on + strandat 50.849 kb on + strandat 50.922 kb on - strandat 50.925 kb on - strandat 51.097 kb on - strandat 51.331 kb on + strandat 51.673 kb on + strand, within EX28DRAFT_4244at 51.673 kb on + strand, within EX28DRAFT_4244at 51.674 kb on - strand, within EX28DRAFT_4244at 51.733 kb on + strandat 51.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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48,268 + +0.0
48,269 - -0.6
48,308 + +0.1
48,320 + +0.5
48,321 - -0.1
48,321 - +1.1
48,321 - +0.4
48,328 + -0.1
48,328 + -0.5
48,328 + -0.1
48,329 - +0.5
48,331 - +0.1
48,331 - +0.2
48,457 + EX28DRAFT_4241 0.22 -0.4
48,458 - EX28DRAFT_4241 0.22 -0.0
48,493 + EX28DRAFT_4241 0.30 +0.3
48,494 - EX28DRAFT_4241 0.30 +0.2
48,499 + EX28DRAFT_4241 0.31 -0.3
48,703 + EX28DRAFT_4241 0.76 +0.7
48,703 + EX28DRAFT_4241 0.76 +0.8
48,704 - EX28DRAFT_4241 0.76 -0.4
48,724 - EX28DRAFT_4241 0.80 -0.2
48,790 + -0.5
48,836 - +0.1
48,878 - -0.6
48,886 + -0.2
48,887 - -0.3
48,892 + -0.3
48,892 + +0.1
48,897 - +0.6
48,912 + -0.1
48,912 + +0.2
48,912 + -0.3
48,913 - +0.3
48,930 + -0.0
48,943 - +1.1
48,964 - EX28DRAFT_4242 0.16 +0.9
48,964 - EX28DRAFT_4242 0.16 +0.5
48,996 + EX28DRAFT_4242 0.25 -0.2
49,022 - EX28DRAFT_4242 0.33 -0.5
49,022 - EX28DRAFT_4242 0.33 +0.5
49,022 - EX28DRAFT_4242 0.33 +0.5
49,022 - EX28DRAFT_4242 0.33 +0.1
49,157 - EX28DRAFT_4242 0.75 -0.3
49,369 + -0.5
49,419 + EX28DRAFT_4243 0.11 -0.6
49,419 + EX28DRAFT_4243 0.11 -0.2
49,636 + EX28DRAFT_4243 0.25 +3.3
49,637 - EX28DRAFT_4243 0.25 -2.2
49,637 - EX28DRAFT_4243 0.25 -0.5
49,741 - EX28DRAFT_4243 0.32 +1.1
49,741 - EX28DRAFT_4243 0.32 +0.3
49,742 + EX28DRAFT_4243 0.32 -0.4
49,742 + EX28DRAFT_4243 0.32 -2.0
49,743 - EX28DRAFT_4243 0.32 +0.1
49,802 + EX28DRAFT_4243 0.36 +0.9
49,803 - EX28DRAFT_4243 0.36 +0.1
49,803 - EX28DRAFT_4243 0.36 -0.4
49,803 - EX28DRAFT_4243 0.36 -0.1
49,803 - EX28DRAFT_4243 0.36 -0.2
49,803 - EX28DRAFT_4243 0.36 -0.1
49,803 - EX28DRAFT_4243 0.36 -2.1
49,803 - EX28DRAFT_4243 0.36 -0.1
49,930 - EX28DRAFT_4243 0.44 +0.1
49,930 - EX28DRAFT_4243 0.44 -0.2
49,939 - EX28DRAFT_4243 0.44 -0.4
50,043 + EX28DRAFT_4243 0.51 -0.0
50,044 - EX28DRAFT_4243 0.51 -0.2
50,163 - EX28DRAFT_4243 0.59 -2.4
50,172 - EX28DRAFT_4243 0.59 -0.3
50,282 + EX28DRAFT_4243 0.66 +0.1
50,283 - EX28DRAFT_4243 0.66 +1.5
50,371 - EX28DRAFT_4243 0.72 +0.3
50,371 - EX28DRAFT_4243 0.72 +0.2
50,372 + EX28DRAFT_4243 0.72 +0.7
50,372 + EX28DRAFT_4243 0.72 +0.1
50,373 - EX28DRAFT_4243 0.72 -0.3
50,373 - EX28DRAFT_4243 0.72 +0.4
50,383 - EX28DRAFT_4243 0.73 +0.1
50,384 + EX28DRAFT_4243 0.73 -1.2
50,445 - EX28DRAFT_4243 0.77 +0.2
50,565 + EX28DRAFT_4243 0.84 -0.2
50,565 + EX28DRAFT_4243 0.84 -0.4
50,565 + EX28DRAFT_4243 0.84 -0.4
50,567 + EX28DRAFT_4243 0.84 +1.1
50,568 - EX28DRAFT_4243 0.84 -0.5
50,568 - EX28DRAFT_4243 0.84 -1.4
50,568 - EX28DRAFT_4243 0.84 -0.2
50,568 - EX28DRAFT_4243 0.84 -0.6
50,687 - +0.3
50,754 + +0.2
50,754 + +0.8
50,755 - -0.7
50,758 + -1.4
50,758 + -0.8
50,758 + -0.9
50,759 - -0.2
50,759 - +0.0
50,759 - -0.1
50,759 - +0.3
50,774 - -0.5
50,821 + -0.5
50,846 + -0.4
50,849 + -0.1
50,922 - -0.6
50,925 - +0.1
51,097 - -0.4
51,331 + +0.2
51,673 + EX28DRAFT_4244 0.76 -0.3
51,673 + EX28DRAFT_4244 0.76 +0.3
51,674 - EX28DRAFT_4244 0.77 -0.5
51,733 + +0.1
51,734 - -0.0

Or see this region's nucleotide sequence