Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4176 and EX28DRAFT_4177 are separated by 112 nucleotides EX28DRAFT_4177 and EX28DRAFT_4178 are separated by 138 nucleotides EX28DRAFT_4178 and EX28DRAFT_4179 overlap by 1 nucleotides
EX28DRAFT_4176: EX28DRAFT_4176 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 158,824 to 159,846
_4176
EX28DRAFT_4177: EX28DRAFT_4177 - ATPase components of ABC transporters with duplicated ATPase domains, at 159,959 to 161,863
_4177
EX28DRAFT_4178: EX28DRAFT_4178 - Putative NADPH-quinone reductase (modulator of drug activity B), at 162,002 to 162,553
_4178
EX28DRAFT_4179: EX28DRAFT_4179 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 162,553 to 164,358
_4179
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.021 kb on + strand, within EX28DRAFT_4176 at 159.078 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.440 kb on - strand, within EX28DRAFT_4176 at 159.477 kb on - strand, within EX28DRAFT_4176 at 159.630 kb on + strand, within EX28DRAFT_4176 at 159.784 kb on - strand at 159.846 kb on + strand at 159.881 kb on + strand at 159.882 kb on - strand at 159.904 kb on + strand at 159.952 kb on - strand at 159.955 kb on + strand at 159.956 kb on - strand at 160.092 kb on + strand at 160.321 kb on - strand, within EX28DRAFT_4177 at 160.371 kb on + strand, within EX28DRAFT_4177 at 160.371 kb on + strand, within EX28DRAFT_4177 at 160.372 kb on - strand, within EX28DRAFT_4177 at 160.372 kb on - strand, within EX28DRAFT_4177 at 160.728 kb on + strand, within EX28DRAFT_4177 at 160.886 kb on - strand, within EX28DRAFT_4177 at 161.118 kb on + strand, within EX28DRAFT_4177 at 161.119 kb on - strand, within EX28DRAFT_4177 at 161.172 kb on + strand, within EX28DRAFT_4177 at 161.172 kb on + strand, within EX28DRAFT_4177 at 161.173 kb on - strand, within EX28DRAFT_4177 at 161.280 kb on + strand, within EX28DRAFT_4177 at 161.309 kb on - strand, within EX28DRAFT_4177 at 161.389 kb on + strand, within EX28DRAFT_4177 at 161.390 kb on - strand, within EX28DRAFT_4177 at 161.390 kb on - strand, within EX28DRAFT_4177 at 161.398 kb on + strand, within EX28DRAFT_4177 at 161.465 kb on + strand, within EX28DRAFT_4177 at 161.617 kb on - strand, within EX28DRAFT_4177 at 161.617 kb on - strand, within EX28DRAFT_4177 at 161.690 kb on - strand at 161.798 kb on - strand at 161.863 kb on + strand at 161.864 kb on - strand at 161.864 kb on - strand at 161.886 kb on - strand at 161.886 kb on - strand at 161.890 kb on + strand at 161.890 kb on + strand at 161.891 kb on - strand at 161.907 kb on - strand at 161.907 kb on - strand at 161.911 kb on + strand at 161.911 kb on + strand at 161.911 kb on + strand at 161.912 kb on - strand at 161.912 kb on - strand at 161.912 kb on - strand at 161.912 kb on - strand at 162.032 kb on + strand at 162.033 kb on - strand at 162.214 kb on + strand, within EX28DRAFT_4178 at 162.214 kb on + strand, within EX28DRAFT_4178 at 162.214 kb on + strand, within EX28DRAFT_4178 at 162.214 kb on + strand, within EX28DRAFT_4178 at 162.215 kb on - strand, within EX28DRAFT_4178 at 162.215 kb on - strand, within EX28DRAFT_4178 at 162.215 kb on - strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.218 kb on + strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.219 kb on - strand, within EX28DRAFT_4178 at 162.220 kb on + strand, within EX28DRAFT_4178 at 162.220 kb on + strand, within EX28DRAFT_4178 at 162.221 kb on - strand, within EX28DRAFT_4178 at 162.221 kb on - strand, within EX28DRAFT_4178 at 162.221 kb on - strand, within EX28DRAFT_4178 at 162.451 kb on + strand, within EX28DRAFT_4178 at 162.510 kb on - strand at 162.570 kb on - strand at 162.813 kb on - strand, within EX28DRAFT_4179 at 162.813 kb on - strand, within EX28DRAFT_4179
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 159,021 + EX28DRAFT_4176 0.19 +0.1 159,021 + EX28DRAFT_4176 0.19 +0.1 159,078 - EX28DRAFT_4176 0.25 -1.4 159,440 - EX28DRAFT_4176 0.60 +0.5 159,440 - EX28DRAFT_4176 0.60 +0.1 159,477 - EX28DRAFT_4176 0.64 +0.1 159,630 + EX28DRAFT_4176 0.79 -2.7 159,784 - +0.4 159,846 + -0.5 159,881 + +0.5 159,882 - -0.4 159,904 + +0.3 159,952 - +0.1 159,955 + -0.1 159,956 - +0.2 160,092 + +0.0 160,321 - EX28DRAFT_4177 0.19 +0.6 160,371 + EX28DRAFT_4177 0.22 -0.2 160,371 + EX28DRAFT_4177 0.22 -0.0 160,372 - EX28DRAFT_4177 0.22 -0.0 160,372 - EX28DRAFT_4177 0.22 -0.2 160,728 + EX28DRAFT_4177 0.40 -0.0 160,886 - EX28DRAFT_4177 0.49 -0.0 161,118 + EX28DRAFT_4177 0.61 -0.2 161,119 - EX28DRAFT_4177 0.61 -0.6 161,172 + EX28DRAFT_4177 0.64 +0.0 161,172 + EX28DRAFT_4177 0.64 +1.1 161,173 - EX28DRAFT_4177 0.64 +0.0 161,280 + EX28DRAFT_4177 0.69 +0.5 161,309 - EX28DRAFT_4177 0.71 +0.1 161,389 + EX28DRAFT_4177 0.75 -0.2 161,390 - EX28DRAFT_4177 0.75 +0.8 161,390 - EX28DRAFT_4177 0.75 +1.3 161,398 + EX28DRAFT_4177 0.76 +0.1 161,465 + EX28DRAFT_4177 0.79 +0.1 161,617 - EX28DRAFT_4177 0.87 -0.2 161,617 - EX28DRAFT_4177 0.87 +0.1 161,690 - -0.1 161,798 - -0.2 161,863 + -0.0 161,864 - +1.1 161,864 - -0.2 161,886 - +0.2 161,886 - +0.9 161,890 + +0.0 161,890 + -0.9 161,891 - -0.4 161,907 - +0.5 161,907 - +0.0 161,911 + +0.4 161,911 + -0.1 161,911 + -0.4 161,912 - +0.2 161,912 - -0.4 161,912 - +0.1 161,912 - -3.7 162,032 + +1.0 162,033 - +0.5 162,214 + EX28DRAFT_4178 0.38 -0.9 162,214 + EX28DRAFT_4178 0.38 -0.5 162,214 + EX28DRAFT_4178 0.38 -0.0 162,214 + EX28DRAFT_4178 0.38 +1.9 162,215 - EX28DRAFT_4178 0.39 -0.1 162,215 - EX28DRAFT_4178 0.39 +0.6 162,215 - EX28DRAFT_4178 0.39 +0.2 162,218 + EX28DRAFT_4178 0.39 +0.5 162,218 + EX28DRAFT_4178 0.39 -0.0 162,218 + EX28DRAFT_4178 0.39 +0.7 162,218 + EX28DRAFT_4178 0.39 -0.8 162,218 + EX28DRAFT_4178 0.39 +1.2 162,218 + EX28DRAFT_4178 0.39 +0.2 162,218 + EX28DRAFT_4178 0.39 +1.1 162,218 + EX28DRAFT_4178 0.39 +0.1 162,218 + EX28DRAFT_4178 0.39 +0.1 162,218 + EX28DRAFT_4178 0.39 +0.6 162,219 - EX28DRAFT_4178 0.39 -1.9 162,219 - EX28DRAFT_4178 0.39 +0.1 162,219 - EX28DRAFT_4178 0.39 -0.1 162,219 - EX28DRAFT_4178 0.39 +0.1 162,219 - EX28DRAFT_4178 0.39 +0.7 162,219 - EX28DRAFT_4178 0.39 +1.1 162,219 - EX28DRAFT_4178 0.39 -0.0 162,219 - EX28DRAFT_4178 0.39 +0.2 162,219 - EX28DRAFT_4178 0.39 +0.5 162,219 - EX28DRAFT_4178 0.39 +0.3 162,219 - EX28DRAFT_4178 0.39 -2.0 162,219 - EX28DRAFT_4178 0.39 +0.2 162,219 - EX28DRAFT_4178 0.39 -0.0 162,220 + EX28DRAFT_4178 0.39 -0.7 162,220 + EX28DRAFT_4178 0.39 +0.9 162,221 - EX28DRAFT_4178 0.40 +0.2 162,221 - EX28DRAFT_4178 0.40 +0.8 162,221 - EX28DRAFT_4178 0.40 -0.3 162,451 + EX28DRAFT_4178 0.81 +0.3 162,510 - +0.6 162,570 - +0.2 162,813 - EX28DRAFT_4179 0.14 -0.4 162,813 - EX28DRAFT_4179 0.14 -0.0
Or see this region's nucleotide sequence