Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4062

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4061 and EX28DRAFT_4062 are separated by 71 nucleotidesEX28DRAFT_4062 and EX28DRAFT_4063 are separated by 214 nucleotides EX28DRAFT_4061: EX28DRAFT_4061 - NADPH-glutathione reductase (EC 1.8.1.7), at 35,964 to 37,316 _4061 EX28DRAFT_4062: EX28DRAFT_4062 - Protein involved in catabolism of external DNA, at 37,388 to 38,230 _4062 EX28DRAFT_4063: EX28DRAFT_4063 - Zn-dependent oligopeptidases, at 38,445 to 40,487 _4063 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1at 36.421 kb on + strand, within EX28DRAFT_4061at 36.466 kb on + strand, within EX28DRAFT_4061at 36.722 kb on + strand, within EX28DRAFT_4061at 36.998 kb on + strand, within EX28DRAFT_4061at 37.120 kb on + strand, within EX28DRAFT_4061at 37.121 kb on - strand, within EX28DRAFT_4061at 37.121 kb on - strand, within EX28DRAFT_4061at 37.121 kb on - strand, within EX28DRAFT_4061at 37.124 kb on + strand, within EX28DRAFT_4061at 37.125 kb on - strand, within EX28DRAFT_4061at 37.297 kb on + strandat 37.612 kb on + strand, within EX28DRAFT_4062at 37.657 kb on - strand, within EX28DRAFT_4062at 37.657 kb on - strand, within EX28DRAFT_4062at 37.681 kb on - strand, within EX28DRAFT_4062at 37.989 kb on + strand, within EX28DRAFT_4062at 37.989 kb on + strand, within EX28DRAFT_4062at 37.990 kb on - strand, within EX28DRAFT_4062at 37.990 kb on - strand, within EX28DRAFT_4062at 38.049 kb on + strand, within EX28DRAFT_4062at 38.253 kb on - strandat 38.258 kb on + strandat 38.293 kb on - strandat 38.311 kb on - strandat 38.311 kb on - strandat 38.311 kb on - strandat 38.312 kb on + strandat 38.313 kb on - strandat 38.365 kb on + strandat 38.366 kb on - strandat 38.371 kb on + strandat 38.391 kb on + strandat 38.392 kb on - strandat 38.392 kb on - strandat 38.424 kb on + strandat 38.424 kb on + strandat 38.800 kb on - strand, within EX28DRAFT_4063at 38.940 kb on + strand, within EX28DRAFT_4063at 39.099 kb on + strand, within EX28DRAFT_4063at 39.100 kb on - strand, within EX28DRAFT_4063at 39.151 kb on - strand, within EX28DRAFT_4063at 39.159 kb on + strand, within EX28DRAFT_4063at 39.160 kb on - strand, within EX28DRAFT_4063

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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36,421 + EX28DRAFT_4061 0.34 -1.8
36,466 + EX28DRAFT_4061 0.37 -2.5
36,722 + EX28DRAFT_4061 0.56 -1.0
36,998 + EX28DRAFT_4061 0.76 -2.0
37,120 + EX28DRAFT_4061 0.85 -1.5
37,121 - EX28DRAFT_4061 0.86 -0.9
37,121 - EX28DRAFT_4061 0.86 -1.3
37,121 - EX28DRAFT_4061 0.86 -2.5
37,124 + EX28DRAFT_4061 0.86 -0.8
37,125 - EX28DRAFT_4061 0.86 -0.6
37,297 + +0.3
37,612 + EX28DRAFT_4062 0.27 -0.2
37,657 - EX28DRAFT_4062 0.32 +0.3
37,657 - EX28DRAFT_4062 0.32 -3.0
37,681 - EX28DRAFT_4062 0.35 +0.4
37,989 + EX28DRAFT_4062 0.71 -1.6
37,989 + EX28DRAFT_4062 0.71 -0.1
37,990 - EX28DRAFT_4062 0.71 +0.1
37,990 - EX28DRAFT_4062 0.71 -1.4
38,049 + EX28DRAFT_4062 0.78 -0.0
38,253 - +0.0
38,258 + -0.8
38,293 - -2.9
38,311 - +0.3
38,311 - +0.3
38,311 - +0.4
38,312 + -0.4
38,313 - +0.7
38,365 + +0.1
38,366 - -0.0
38,371 + +0.0
38,391 + -0.0
38,392 - -0.8
38,392 - -0.3
38,424 + -0.0
38,424 + -1.3
38,800 - EX28DRAFT_4063 0.17 -0.4
38,940 + EX28DRAFT_4063 0.24 +1.4
39,099 + EX28DRAFT_4063 0.32 +0.3
39,100 - EX28DRAFT_4063 0.32 -0.9
39,151 - EX28DRAFT_4063 0.35 -1.3
39,159 + EX28DRAFT_4063 0.35 +0.1
39,160 - EX28DRAFT_4063 0.35 -1.2

Or see this region's nucleotide sequence