Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3980 and EX28DRAFT_3981 overlap by 17 nucleotides EX28DRAFT_3981 and EX28DRAFT_3982 overlap by 4 nucleotides EX28DRAFT_3982 and EX28DRAFT_3983 are separated by 226 nucleotides
EX28DRAFT_3980: EX28DRAFT_3980 - 2-keto-3-deoxy-6-phosphogluconate aldolase, at 187,863 to 188,480
_3980
EX28DRAFT_3981: EX28DRAFT_3981 - 2-keto-3-deoxy-galactonokinase, at 188,464 to 189,342
_3981
EX28DRAFT_3982: EX28DRAFT_3982 - Transcriptional regulators, at 189,339 to 190,028
_3982
EX28DRAFT_3983: EX28DRAFT_3983 - HAD-superfamily hydrolase, subfamily IIB, at 190,255 to 191,067
_3983
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 188.940 kb on - strand, within EX28DRAFT_3981 at 189.040 kb on - strand, within EX28DRAFT_3981 at 189.049 kb on - strand, within EX28DRAFT_3981 at 189.222 kb on + strand, within EX28DRAFT_3981 at 189.223 kb on - strand, within EX28DRAFT_3981 at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.383 kb on + strand at 189.384 kb on - strand at 189.443 kb on + strand, within EX28DRAFT_3982 at 189.443 kb on + strand, within EX28DRAFT_3982 at 189.502 kb on - strand, within EX28DRAFT_3982 at 189.533 kb on + strand, within EX28DRAFT_3982 at 189.964 kb on + strand at 189.964 kb on + strand at 190.017 kb on - strand at 190.048 kb on + strand at 190.048 kb on + strand at 190.048 kb on + strand at 190.049 kb on - strand at 190.060 kb on + strand at 190.060 kb on + strand at 190.061 kb on - strand at 190.061 kb on - strand at 190.113 kb on + strand at 190.114 kb on - strand at 190.284 kb on - strand at 190.479 kb on + strand, within EX28DRAFT_3983 at 190.480 kb on - strand, within EX28DRAFT_3983 at 190.512 kb on - strand, within EX28DRAFT_3983 at 190.535 kb on + strand, within EX28DRAFT_3983 at 190.535 kb on + strand, within EX28DRAFT_3983 at 190.536 kb on - strand, within EX28DRAFT_3983 at 190.536 kb on - strand, within EX28DRAFT_3983 at 190.547 kb on - strand, within EX28DRAFT_3983 at 190.695 kb on - strand, within EX28DRAFT_3983 at 190.697 kb on + strand, within EX28DRAFT_3983 at 190.697 kb on + strand, within EX28DRAFT_3983 at 190.697 kb on + strand, within EX28DRAFT_3983 at 190.697 kb on + strand, within EX28DRAFT_3983 at 190.698 kb on - strand, within EX28DRAFT_3983 at 190.720 kb on - strand, within EX28DRAFT_3983 at 190.721 kb on + strand, within EX28DRAFT_3983 at 190.721 kb on + strand, within EX28DRAFT_3983 at 190.722 kb on - strand, within EX28DRAFT_3983 at 190.722 kb on - strand, within EX28DRAFT_3983 at 190.722 kb on - strand, within EX28DRAFT_3983 at 190.728 kb on + strand, within EX28DRAFT_3983 at 190.790 kb on + strand, within EX28DRAFT_3983 at 190.790 kb on + strand, within EX28DRAFT_3983 at 190.790 kb on + strand, within EX28DRAFT_3983 at 190.790 kb on + strand, within EX28DRAFT_3983 at 190.791 kb on - strand, within EX28DRAFT_3983 at 190.791 kb on - strand, within EX28DRAFT_3983 at 190.800 kb on - strand, within EX28DRAFT_3983 at 190.862 kb on + strand, within EX28DRAFT_3983 at 190.862 kb on + strand, within EX28DRAFT_3983 at 190.863 kb on - strand, within EX28DRAFT_3983 at 190.863 kb on - strand, within EX28DRAFT_3983 at 190.910 kb on + strand, within EX28DRAFT_3983 at 190.911 kb on - strand, within EX28DRAFT_3983
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 188,940 - EX28DRAFT_3981 0.54 -0.3 188,940 - EX28DRAFT_3981 0.54 +0.5 188,940 - EX28DRAFT_3981 0.54 +0.2 189,040 - EX28DRAFT_3981 0.66 -0.8 189,049 - EX28DRAFT_3981 0.67 +0.1 189,222 + EX28DRAFT_3981 0.86 +0.7 189,223 - EX28DRAFT_3981 0.86 +0.5 189,383 + -3.4 189,383 + +1.1 189,383 + -0.5 189,383 + -0.4 189,384 - +0.1 189,443 + EX28DRAFT_3982 0.15 -0.0 189,443 + EX28DRAFT_3982 0.15 -0.0 189,502 - EX28DRAFT_3982 0.24 +1.0 189,533 + EX28DRAFT_3982 0.28 +0.8 189,964 + +0.8 189,964 + +0.2 190,017 - -1.2 190,048 + -0.1 190,048 + -0.2 190,048 + -0.7 190,049 - -0.3 190,060 + +1.5 190,060 + -0.2 190,061 - -0.0 190,061 - +0.0 190,113 + +0.7 190,114 - +0.1 190,284 - -0.1 190,479 + EX28DRAFT_3983 0.28 +0.0 190,480 - EX28DRAFT_3983 0.28 -0.1 190,512 - EX28DRAFT_3983 0.32 -1.6 190,535 + EX28DRAFT_3983 0.34 +0.2 190,535 + EX28DRAFT_3983 0.34 -1.3 190,536 - EX28DRAFT_3983 0.35 -0.7 190,536 - EX28DRAFT_3983 0.35 +0.5 190,547 - EX28DRAFT_3983 0.36 -0.5 190,695 - EX28DRAFT_3983 0.54 +0.5 190,697 + EX28DRAFT_3983 0.54 -0.2 190,697 + EX28DRAFT_3983 0.54 -0.1 190,697 + EX28DRAFT_3983 0.54 +0.6 190,697 + EX28DRAFT_3983 0.54 +0.5 190,698 - EX28DRAFT_3983 0.54 +0.9 190,720 - EX28DRAFT_3983 0.57 +0.3 190,721 + EX28DRAFT_3983 0.57 +0.5 190,721 + EX28DRAFT_3983 0.57 +0.2 190,722 - EX28DRAFT_3983 0.57 -0.5 190,722 - EX28DRAFT_3983 0.57 -0.5 190,722 - EX28DRAFT_3983 0.57 -0.1 190,728 + EX28DRAFT_3983 0.58 +1.3 190,790 + EX28DRAFT_3983 0.66 -0.2 190,790 + EX28DRAFT_3983 0.66 -0.1 190,790 + EX28DRAFT_3983 0.66 +0.7 190,790 + EX28DRAFT_3983 0.66 +2.7 190,791 - EX28DRAFT_3983 0.66 +0.6 190,791 - EX28DRAFT_3983 0.66 -2.6 190,800 - EX28DRAFT_3983 0.67 +0.4 190,862 + EX28DRAFT_3983 0.75 -2.0 190,862 + EX28DRAFT_3983 0.75 +0.8 190,863 - EX28DRAFT_3983 0.75 +0.5 190,863 - EX28DRAFT_3983 0.75 +0.1 190,910 + EX28DRAFT_3983 0.81 +0.2 190,911 - EX28DRAFT_3983 0.81 +0.6
Or see this region's nucleotide sequence