Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3874

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3872 and EX28DRAFT_3873 are separated by 3 nucleotidesEX28DRAFT_3873 and EX28DRAFT_3874 are separated by 3 nucleotidesEX28DRAFT_3874 and EX28DRAFT_3875 are separated by 5 nucleotidesEX28DRAFT_3875 and EX28DRAFT_3876 overlap by 13 nucleotides EX28DRAFT_3872: EX28DRAFT_3872 - lipopolysaccharide heptosyltransferase II, at 81,920 to 82,966 _3872 EX28DRAFT_3873: EX28DRAFT_3873 - lipopolysaccharide heptosyltransferase I, at 82,970 to 83,953 _3873 EX28DRAFT_3874: EX28DRAFT_3874 - ADP-heptose:LPS heptosyltransferase, at 83,957 to 85,066 _3874 EX28DRAFT_3875: EX28DRAFT_3875 - Glycosyltransferases involved in cell wall biogenesis, at 85,072 to 85,980 _3875 EX28DRAFT_3876: EX28DRAFT_3876 - Lipid A core - O-antigen ligase and related enzymes, at 85,968 to 87,182 _3876 Position (kb) 83 84 85 86Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 83.948 kb on - strandat 83.948 kb on - strandat 83.951 kb on + strandat 83.951 kb on + strandat 83.951 kb on + strandat 83.952 kb on - strandat 83.964 kb on - strandat 83.967 kb on + strandat 84.096 kb on - strand, within EX28DRAFT_3874at 84.127 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.190 kb on + strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.191 kb on - strand, within EX28DRAFT_3874at 84.197 kb on - strand, within EX28DRAFT_3874at 84.197 kb on - strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.254 kb on + strand, within EX28DRAFT_3874at 84.255 kb on - strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.332 kb on + strand, within EX28DRAFT_3874at 84.419 kb on + strand, within EX28DRAFT_3874at 84.500 kb on + strand, within EX28DRAFT_3874at 84.501 kb on - strand, within EX28DRAFT_3874at 84.636 kb on - strand, within EX28DRAFT_3874at 84.690 kb on - strand, within EX28DRAFT_3874at 84.710 kb on - strand, within EX28DRAFT_3874at 84.773 kb on + strand, within EX28DRAFT_3874at 84.773 kb on + strand, within EX28DRAFT_3874at 84.774 kb on - strand, within EX28DRAFT_3874at 84.801 kb on - strand, within EX28DRAFT_3874at 84.801 kb on - strand, within EX28DRAFT_3874at 84.803 kb on - strand, within EX28DRAFT_3874at 84.822 kb on + strand, within EX28DRAFT_3874at 84.823 kb on - strand, within EX28DRAFT_3874at 84.882 kb on + strand, within EX28DRAFT_3874at 84.882 kb on + strand, within EX28DRAFT_3874at 84.883 kb on - strand, within EX28DRAFT_3874at 84.883 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.918 kb on - strand, within EX28DRAFT_3874at 84.936 kb on - strand, within EX28DRAFT_3874at 84.936 kb on - strand, within EX28DRAFT_3874at 84.938 kb on + strand, within EX28DRAFT_3874at 85.017 kb on + strandat 85.040 kb on + strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.069 kb on - strandat 85.069 kb on - strandat 85.083 kb on + strandat 85.084 kb on - strandat 85.084 kb on - strandat 85.116 kb on + strandat 85.128 kb on + strandat 85.133 kb on + strandat 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.175 kb on + strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.176 kb on - strand, within EX28DRAFT_3875at 85.185 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.221 kb on + strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.222 kb on - strand, within EX28DRAFT_3875at 85.224 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.286 kb on + strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.287 kb on - strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.330 kb on + strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.331 kb on - strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.335 kb on + strand, within EX28DRAFT_3875at 85.336 kb on - strand, within EX28DRAFT_3875at 85.376 kb on + strand, within EX28DRAFT_3875at 85.377 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.417 kb on - strand, within EX28DRAFT_3875at 85.461 kb on + strand, within EX28DRAFT_3875at 85.504 kb on + strand, within EX28DRAFT_3875at 85.505 kb on - strand, within EX28DRAFT_3875at 85.514 kb on + strand, within EX28DRAFT_3875at 85.566 kb on + strand, within EX28DRAFT_3875at 85.583 kb on - strand, within EX28DRAFT_3875at 85.586 kb on + strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.587 kb on - strand, within EX28DRAFT_3875at 85.664 kb on + strand, within EX28DRAFT_3875at 85.665 kb on - strand, within EX28DRAFT_3875at 85.687 kb on + strand, within EX28DRAFT_3875at 85.690 kb on + strand, within EX28DRAFT_3875at 85.691 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.694 kb on - strand, within EX28DRAFT_3875at 85.900 kb on + strandat 85.931 kb on + strandat 85.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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83,948 - +1.1
83,948 - -2.2
83,951 + +0.0
83,951 + -0.7
83,951 + -0.0
83,952 - -1.7
83,964 - -2.2
83,967 + -1.0
84,096 - EX28DRAFT_3874 0.13 -2.7
84,127 + EX28DRAFT_3874 0.15 -1.1
84,190 + EX28DRAFT_3874 0.21 -0.6
84,190 + EX28DRAFT_3874 0.21 -0.1
84,190 + EX28DRAFT_3874 0.21 -0.7
84,191 - EX28DRAFT_3874 0.21 -1.6
84,191 - EX28DRAFT_3874 0.21 -1.6
84,191 - EX28DRAFT_3874 0.21 -2.1
84,197 - EX28DRAFT_3874 0.22 -2.3
84,197 - EX28DRAFT_3874 0.22 -2.0
84,254 + EX28DRAFT_3874 0.27 -4.3
84,254 + EX28DRAFT_3874 0.27 -0.8
84,254 + EX28DRAFT_3874 0.27 -0.4
84,255 - EX28DRAFT_3874 0.27 -3.7
84,332 + EX28DRAFT_3874 0.34 -0.2
84,332 + EX28DRAFT_3874 0.34 +0.1
84,332 + EX28DRAFT_3874 0.34 -0.2
84,419 + EX28DRAFT_3874 0.42 -0.4
84,500 + EX28DRAFT_3874 0.49 -0.8
84,501 - EX28DRAFT_3874 0.49 -3.3
84,636 - EX28DRAFT_3874 0.61 -2.3
84,690 - EX28DRAFT_3874 0.66 -2.6
84,710 - EX28DRAFT_3874 0.68 -2.0
84,773 + EX28DRAFT_3874 0.74 -0.5
84,773 + EX28DRAFT_3874 0.74 -0.0
84,774 - EX28DRAFT_3874 0.74 -2.8
84,801 - EX28DRAFT_3874 0.76 -3.0
84,801 - EX28DRAFT_3874 0.76 -1.7
84,803 - EX28DRAFT_3874 0.76 -2.0
84,822 + EX28DRAFT_3874 0.78 -0.6
84,823 - EX28DRAFT_3874 0.78 +0.2
84,882 + EX28DRAFT_3874 0.83 +0.2
84,882 + EX28DRAFT_3874 0.83 -0.7
84,883 - EX28DRAFT_3874 0.83 -0.7
84,883 - EX28DRAFT_3874 0.83 -1.5
84,918 - EX28DRAFT_3874 0.87 -1.9
84,918 - EX28DRAFT_3874 0.87 -1.6
84,918 - EX28DRAFT_3874 0.87 -1.6
84,936 - EX28DRAFT_3874 0.88 -1.8
84,936 - EX28DRAFT_3874 0.88 -1.5
84,938 + EX28DRAFT_3874 0.88 -0.1
85,017 + +0.9
85,040 + +0.4
85,041 - +0.1
85,041 - +0.2
85,069 - -0.8
85,069 - +0.0
85,083 + -0.3
85,084 - -0.6
85,084 - -0.8
85,116 + -0.9
85,128 + -0.7
85,133 + -1.6
85,175 + EX28DRAFT_3875 0.11 +0.9
85,175 + EX28DRAFT_3875 0.11 -0.6
85,175 + EX28DRAFT_3875 0.11 -2.1
85,175 + EX28DRAFT_3875 0.11 -0.6
85,176 - EX28DRAFT_3875 0.11 -0.7
85,176 - EX28DRAFT_3875 0.11 -0.4
85,185 + EX28DRAFT_3875 0.12 -2.4
85,221 + EX28DRAFT_3875 0.16 -0.3
85,221 + EX28DRAFT_3875 0.16 -1.8
85,222 - EX28DRAFT_3875 0.17 +1.5
85,222 - EX28DRAFT_3875 0.17 -0.2
85,224 + EX28DRAFT_3875 0.17 -1.2
85,286 + EX28DRAFT_3875 0.24 -1.5
85,286 + EX28DRAFT_3875 0.24 -0.4
85,287 - EX28DRAFT_3875 0.24 -0.3
85,287 - EX28DRAFT_3875 0.24 -1.1
85,287 - EX28DRAFT_3875 0.24 -0.2
85,287 - EX28DRAFT_3875 0.24 -0.4
85,330 + EX28DRAFT_3875 0.28 -1.6
85,330 + EX28DRAFT_3875 0.28 -0.9
85,330 + EX28DRAFT_3875 0.28 -0.6
85,331 - EX28DRAFT_3875 0.28 -1.5
85,331 - EX28DRAFT_3875 0.28 -0.4
85,331 - EX28DRAFT_3875 0.28 -0.6
85,331 - EX28DRAFT_3875 0.28 -0.5
85,331 - EX28DRAFT_3875 0.28 -0.6
85,335 + EX28DRAFT_3875 0.29 -0.8
85,335 + EX28DRAFT_3875 0.29 -0.4
85,335 + EX28DRAFT_3875 0.29 -1.0
85,336 - EX28DRAFT_3875 0.29 -1.0
85,376 + EX28DRAFT_3875 0.33 -0.1
85,377 - EX28DRAFT_3875 0.34 -1.1
85,417 - EX28DRAFT_3875 0.38 -0.6
85,417 - EX28DRAFT_3875 0.38 -0.4
85,461 + EX28DRAFT_3875 0.43 -0.8
85,504 + EX28DRAFT_3875 0.48 -1.0
85,505 - EX28DRAFT_3875 0.48 -0.7
85,514 + EX28DRAFT_3875 0.49 -0.7
85,566 + EX28DRAFT_3875 0.54 -0.7
85,583 - EX28DRAFT_3875 0.56 -1.1
85,586 + EX28DRAFT_3875 0.57 -1.4
85,587 - EX28DRAFT_3875 0.57 -0.4
85,587 - EX28DRAFT_3875 0.57 +0.0
85,664 + EX28DRAFT_3875 0.65 -0.4
85,665 - EX28DRAFT_3875 0.65 -0.1
85,687 + EX28DRAFT_3875 0.68 -0.5
85,690 + EX28DRAFT_3875 0.68 -1.0
85,691 - EX28DRAFT_3875 0.68 -0.2
85,694 - EX28DRAFT_3875 0.68 -0.1
85,694 - EX28DRAFT_3875 0.68 -2.6
85,694 - EX28DRAFT_3875 0.68 -0.6
85,694 - EX28DRAFT_3875 0.68 -0.6
85,900 + -0.4
85,931 + -0.3
85,932 - +0.1

Or see this region's nucleotide sequence