Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3740 and EX28DRAFT_3741 overlap by 1 nucleotides EX28DRAFT_3741 and EX28DRAFT_3742 overlap by 4 nucleotides EX28DRAFT_3742 and EX28DRAFT_3743 are separated by 93 nucleotides
EX28DRAFT_3740: EX28DRAFT_3740 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 418,570 to 419,367
_3740
EX28DRAFT_3741: EX28DRAFT_3741 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 419,367 to 420,257
_3741
EX28DRAFT_3742: EX28DRAFT_3742 - ABC-type Fe3+-siderophore transport system, permease component, at 420,254 to 422,236
_3742
EX28DRAFT_3743: EX28DRAFT_3743 - glutamate-1-semialdehyde-2,1-aminomutase, at 422,330 to 423,610
_3743
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 419.298 kb on + strand at 419.298 kb on + strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.561 kb on + strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 420.190 kb on - strand at 420.248 kb on + strand at 420.248 kb on + strand at 420.249 kb on - strand at 420.249 kb on - strand at 420.259 kb on + strand at 420.291 kb on + strand at 420.318 kb on + strand at 420.319 kb on - strand at 420.398 kb on - strand at 420.501 kb on + strand, within EX28DRAFT_3742 at 420.505 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.565 kb on + strand, within EX28DRAFT_3742 at 420.566 kb on - strand, within EX28DRAFT_3742 at 420.734 kb on - strand, within EX28DRAFT_3742 at 420.826 kb on - strand, within EX28DRAFT_3742 at 420.978 kb on + strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 420.979 kb on - strand, within EX28DRAFT_3742 at 421.303 kb on + strand, within EX28DRAFT_3742 at 421.723 kb on + strand, within EX28DRAFT_3742 at 421.802 kb on + strand, within EX28DRAFT_3742 at 422.206 kb on + strand at 422.207 kb on - strand at 422.207 kb on - strand at 422.210 kb on + strand at 422.210 kb on + strand at 422.237 kb on + strand at 422.257 kb on + strand at 422.331 kb on + strand at 422.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 419,298 + -1.4 419,298 + +1.7 419,299 - +1.7 419,299 - -1.4 419,299 - +0.2 419,560 - EX28DRAFT_3741 0.22 +1.2 419,560 - EX28DRAFT_3741 0.22 +0.6 419,560 - EX28DRAFT_3741 0.22 -1.7 419,561 + EX28DRAFT_3741 0.22 +0.5 419,562 - EX28DRAFT_3741 0.22 -0.1 419,562 - EX28DRAFT_3741 0.22 -1.6 420,190 - -0.1 420,248 + +1.1 420,248 + -0.4 420,249 - -0.0 420,249 - -0.4 420,259 + -0.7 420,291 + +0.3 420,318 + -0.7 420,319 - -0.1 420,398 - -1.5 420,501 + EX28DRAFT_3742 0.12 +0.7 420,505 + EX28DRAFT_3742 0.13 +2.8 420,565 + EX28DRAFT_3742 0.16 -0.2 420,565 + EX28DRAFT_3742 0.16 -0.1 420,565 + EX28DRAFT_3742 0.16 -0.5 420,566 - EX28DRAFT_3742 0.16 +0.2 420,734 - EX28DRAFT_3742 0.24 +0.3 420,826 - EX28DRAFT_3742 0.29 -0.4 420,978 + EX28DRAFT_3742 0.37 +0.7 420,979 - EX28DRAFT_3742 0.37 -0.1 420,979 - EX28DRAFT_3742 0.37 +0.1 420,979 - EX28DRAFT_3742 0.37 -2.0 420,979 - EX28DRAFT_3742 0.37 +0.9 421,303 + EX28DRAFT_3742 0.53 +1.6 421,723 + EX28DRAFT_3742 0.74 +1.3 421,802 + EX28DRAFT_3742 0.78 -0.2 422,206 + +0.7 422,207 - +2.7 422,207 - -0.9 422,210 + +0.2 422,210 + +0.4 422,237 + -2.0 422,257 + -1.9 422,331 + +0.2 422,332 - -0.9
Or see this region's nucleotide sequence