Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3696 and EX28DRAFT_3697 overlap by 1 nucleotides EX28DRAFT_3697 and EX28DRAFT_3698 are separated by 228 nucleotides EX28DRAFT_3698 and EX28DRAFT_3699 are separated by 41 nucleotides
EX28DRAFT_3696: EX28DRAFT_3696 - Uncharacterized protein conserved in bacteria, at 366,658 to 367,401
_3696
EX28DRAFT_3697: EX28DRAFT_3697 - dephospho-CoA kinase, at 367,401 to 368,021
_3697
EX28DRAFT_3698: EX28DRAFT_3698 - guanosine monophosphate reductase, eukaryotic, at 368,250 to 369,293
_3698
EX28DRAFT_3699: EX28DRAFT_3699 - Type II secretory pathway, component PulF, at 369,335 to 370,519
_3699
Position (kb) 368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 367.329 kb on + strand at 367.329 kb on + strand at 368.013 kb on - strand at 368.049 kb on - strand at 368.052 kb on - strand at 368.074 kb on + strand at 368.138 kb on + strand at 368.178 kb on + strand at 368.182 kb on - strand at 368.189 kb on - strand at 368.189 kb on - strand at 368.189 kb on - strand at 368.216 kb on + strand at 368.217 kb on - strand at 368.221 kb on + strand at 368.222 kb on - strand at 368.275 kb on + strand at 368.275 kb on + strand at 368.275 kb on + strand at 368.275 kb on + strand at 368.313 kb on - strand at 368.414 kb on + strand, within EX28DRAFT_3698 at 368.485 kb on - strand, within EX28DRAFT_3698 at 369.038 kb on + strand, within EX28DRAFT_3698 at 369.201 kb on + strand at 369.201 kb on + strand at 369.201 kb on + strand at 369.201 kb on + strand at 369.202 kb on - strand at 369.202 kb on - strand at 369.202 kb on - strand at 369.249 kb on - strand at 369.249 kb on - strand at 369.378 kb on + strand at 369.378 kb on + strand at 369.379 kb on - strand at 369.876 kb on + strand, within EX28DRAFT_3699 at 369.877 kb on - strand, within EX28DRAFT_3699 at 369.877 kb on - strand, within EX28DRAFT_3699 at 369.887 kb on - strand, within EX28DRAFT_3699 at 369.887 kb on - strand, within EX28DRAFT_3699 at 369.948 kb on + strand, within EX28DRAFT_3699
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 367,329 + -0.4 367,329 + -0.0 368,013 - -1.1 368,049 - -0.1 368,052 - +0.3 368,074 + +0.2 368,138 + -0.0 368,178 + -0.3 368,182 - +0.7 368,189 - -0.9 368,189 - -0.6 368,189 - -0.2 368,216 + -0.9 368,217 - -0.6 368,221 + -0.1 368,222 - +0.5 368,275 + +0.6 368,275 + -0.2 368,275 + -0.9 368,275 + -1.0 368,313 - -0.1 368,414 + EX28DRAFT_3698 0.16 -0.2 368,485 - EX28DRAFT_3698 0.23 -0.9 369,038 + EX28DRAFT_3698 0.75 -0.6 369,201 + +0.3 369,201 + -2.0 369,201 + -0.4 369,201 + +1.2 369,202 - +0.5 369,202 - +3.0 369,202 - -0.1 369,249 - -1.1 369,249 - -1.8 369,378 + -0.2 369,378 + -1.8 369,379 - -0.0 369,876 + EX28DRAFT_3699 0.46 -0.4 369,877 - EX28DRAFT_3699 0.46 -1.8 369,877 - EX28DRAFT_3699 0.46 -0.7 369,887 - EX28DRAFT_3699 0.47 +0.4 369,887 - EX28DRAFT_3699 0.47 -0.7 369,948 + EX28DRAFT_3699 0.52 +0.6
Or see this region's nucleotide sequence