Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3602 and EX28DRAFT_3603 are separated by 55 nucleotides EX28DRAFT_3603 and EX28DRAFT_3604 are separated by 27 nucleotides EX28DRAFT_3604 and EX28DRAFT_3605 are separated by 50 nucleotides
EX28DRAFT_3602: EX28DRAFT_3602 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 261,273 to 263,210
_3602
EX28DRAFT_3603: EX28DRAFT_3603 - Trp operon repressor, at 263,266 to 263,595
_3603
EX28DRAFT_3604: EX28DRAFT_3604 - inosine/xanthosine triphosphatase, at 263,623 to 264,138
_3604
EX28DRAFT_3605: EX28DRAFT_3605 - Fructose-2,6-bisphosphatase, at 264,189 to 264,836
_3605
Position (kb) 263
264 Strain fitness (log2 ratio) -2
-1
0
1 at 262.382 kb on + strand, within EX28DRAFT_3602 at 262.443 kb on + strand, within EX28DRAFT_3602 at 262.444 kb on - strand, within EX28DRAFT_3602 at 262.456 kb on + strand, within EX28DRAFT_3602 at 262.457 kb on - strand, within EX28DRAFT_3602 at 262.457 kb on - strand, within EX28DRAFT_3602 at 262.530 kb on + strand, within EX28DRAFT_3602 at 262.539 kb on - strand, within EX28DRAFT_3602 at 262.710 kb on + strand, within EX28DRAFT_3602 at 262.734 kb on - strand, within EX28DRAFT_3602 at 262.734 kb on - strand, within EX28DRAFT_3602 at 262.761 kb on + strand, within EX28DRAFT_3602 at 262.844 kb on + strand, within EX28DRAFT_3602 at 262.880 kb on + strand, within EX28DRAFT_3602 at 262.951 kb on - strand, within EX28DRAFT_3602 at 262.983 kb on - strand, within EX28DRAFT_3602 at 263.007 kb on + strand, within EX28DRAFT_3602 at 263.113 kb on - strand at 263.142 kb on + strand at 263.142 kb on + strand at 263.146 kb on - strand at 263.146 kb on - strand at 263.227 kb on + strand at 263.262 kb on + strand at 263.263 kb on - strand at 263.263 kb on - strand at 263.284 kb on + strand at 263.577 kb on - strand at 263.577 kb on - strand at 263.617 kb on - strand at 263.678 kb on + strand, within EX28DRAFT_3604 at 263.733 kb on + strand, within EX28DRAFT_3604 at 263.759 kb on + strand, within EX28DRAFT_3604 at 263.760 kb on - strand, within EX28DRAFT_3604 at 264.111 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.139 kb on - strand at 264.143 kb on - strand at 264.172 kb on + strand at 264.173 kb on - strand at 264.173 kb on - strand at 264.173 kb on - strand at 264.174 kb on + strand at 264.174 kb on + strand at 264.201 kb on + strand at 264.201 kb on + strand at 264.202 kb on - strand at 264.202 kb on - strand at 264.202 kb on - strand at 264.465 kb on - strand, within EX28DRAFT_3605 at 264.465 kb on - strand, within EX28DRAFT_3605 at 264.563 kb on + strand, within EX28DRAFT_3605
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 262,382 + EX28DRAFT_3602 0.57 +0.5 262,443 + EX28DRAFT_3602 0.60 +0.1 262,444 - EX28DRAFT_3602 0.60 +0.5 262,456 + EX28DRAFT_3602 0.61 +0.0 262,457 - EX28DRAFT_3602 0.61 -1.3 262,457 - EX28DRAFT_3602 0.61 +0.7 262,530 + EX28DRAFT_3602 0.65 -1.5 262,539 - EX28DRAFT_3602 0.65 -1.7 262,710 + EX28DRAFT_3602 0.74 -0.8 262,734 - EX28DRAFT_3602 0.75 +0.4 262,734 - EX28DRAFT_3602 0.75 -0.2 262,761 + EX28DRAFT_3602 0.77 -0.0 262,844 + EX28DRAFT_3602 0.81 +0.9 262,880 + EX28DRAFT_3602 0.83 -1.5 262,951 - EX28DRAFT_3602 0.87 -1.8 262,983 - EX28DRAFT_3602 0.88 -0.1 263,007 + EX28DRAFT_3602 0.89 +0.6 263,113 - -0.2 263,142 + +0.7 263,142 + +0.3 263,146 - +0.5 263,146 - +1.6 263,227 + -0.1 263,262 + +1.0 263,263 - +0.2 263,263 - +0.3 263,284 + -0.1 263,577 - -0.8 263,577 - +0.4 263,617 - +0.1 263,678 + EX28DRAFT_3604 0.11 +0.7 263,733 + EX28DRAFT_3604 0.21 -0.9 263,759 + EX28DRAFT_3604 0.26 -1.2 263,760 - EX28DRAFT_3604 0.27 -1.8 264,111 + +0.5 264,138 + -0.5 264,138 + +0.7 264,138 + -0.2 264,138 + +0.2 264,139 - +0.3 264,143 - +0.7 264,172 + +0.4 264,173 - +0.6 264,173 - -0.0 264,173 - +1.4 264,174 + +0.2 264,174 + +0.6 264,201 + +0.3 264,201 + -0.1 264,202 - -0.1 264,202 - -0.4 264,202 - +0.4 264,465 - EX28DRAFT_3605 0.43 +0.8 264,465 - EX28DRAFT_3605 0.43 -1.5 264,563 + EX28DRAFT_3605 0.58 +0.9
Or see this region's nucleotide sequence