Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3515 and EX28DRAFT_3516 are separated by 100 nucleotides EX28DRAFT_3516 and EX28DRAFT_3517 are separated by 152 nucleotides EX28DRAFT_3517 and EX28DRAFT_3518 overlap by 8 nucleotides EX28DRAFT_3518 and EX28DRAFT_3519 overlap by 26 nucleotides
EX28DRAFT_3514: EX28DRAFT_3514 - alkylhydroperoxidase AhpD family core domain, at 179,837 to 180,316
_3514
EX28DRAFT_3515: EX28DRAFT_3515 - Transcriptional regulator, at 180,303 to 181,205
_3515
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
EX28DRAFT_3517: EX28DRAFT_3517 - Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides, at 182,874 to 183,197
_3517
EX28DRAFT_3518: EX28DRAFT_3518 - ACT domain-containing protein, at 183,190 to 183,585
_3518
EX28DRAFT_3519: EX28DRAFT_3519 - Predicted transcriptional regulators, at 183,560 to 184,255
_3519
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 180.385 kb on + strand at 180.385 kb on + strand at 180.385 kb on + strand at 180.386 kb on - strand at 180.423 kb on + strand, within EX28DRAFT_3515 at 180.426 kb on + strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.505 kb on - strand, within EX28DRAFT_3515 at 180.598 kb on + strand, within EX28DRAFT_3515 at 180.686 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 181.173 kb on + strand at 181.174 kb on - strand at 181.205 kb on + strand at 181.205 kb on + strand at 181.303 kb on + strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.305 kb on + strand at 181.305 kb on + strand at 181.306 kb on - strand at 181.306 kb on - strand at 181.329 kb on + strand at 181.329 kb on + strand at 181.330 kb on - strand at 181.580 kb on - strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.670 kb on - strand, within EX28DRAFT_3516 at 182.118 kb on + strand, within EX28DRAFT_3516 at 182.300 kb on - strand, within EX28DRAFT_3516 at 182.300 kb on - strand, within EX28DRAFT_3516 at 182.515 kb on + strand, within EX28DRAFT_3516 at 182.644 kb on - strand at 182.644 kb on - strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.799 kb on + strand at 182.800 kb on - strand at 183.129 kb on + strand, within EX28DRAFT_3517 at 183.130 kb on - strand, within EX28DRAFT_3517 at 183.193 kb on + strand at 183.193 kb on + strand at 183.193 kb on + strand at 183.194 kb on - strand at 183.364 kb on - strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.522 kb on + strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.523 kb on - strand, within EX28DRAFT_3518 at 183.559 kb on + strand at 183.559 kb on + strand at 183.559 kb on + strand at 183.560 kb on - strand at 183.560 kb on - strand at 183.577 kb on - strand at 183.577 kb on - strand at 183.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 180,385 + -1.1 180,385 + +0.6 180,385 + +1.5 180,386 - +0.2 180,423 + EX28DRAFT_3515 0.13 +0.7 180,426 + EX28DRAFT_3515 0.14 -0.4 180,467 - EX28DRAFT_3515 0.18 +0.8 180,467 - EX28DRAFT_3515 0.18 +0.6 180,467 - EX28DRAFT_3515 0.18 -1.4 180,505 - EX28DRAFT_3515 0.22 -1.3 180,598 + EX28DRAFT_3515 0.33 -0.1 180,686 - EX28DRAFT_3515 0.42 +0.8 180,785 - EX28DRAFT_3515 0.53 +1.2 180,785 - EX28DRAFT_3515 0.53 +0.2 180,858 - EX28DRAFT_3515 0.61 +0.2 180,858 - EX28DRAFT_3515 0.61 +0.6 181,173 + +0.1 181,174 - -1.1 181,205 + +1.9 181,205 + +0.3 181,303 + +0.6 181,304 - +0.5 181,304 - +0.3 181,304 - -0.4 181,304 - +0.1 181,304 - +0.1 181,304 - +0.5 181,305 + -0.2 181,305 + +0.3 181,306 - -0.6 181,306 - +0.2 181,329 + +0.3 181,329 + +0.3 181,330 - -1.7 181,580 - EX28DRAFT_3516 0.19 -0.4 181,669 + EX28DRAFT_3516 0.26 +1.1 181,669 + EX28DRAFT_3516 0.26 +0.4 181,669 + EX28DRAFT_3516 0.26 +0.3 181,670 - EX28DRAFT_3516 0.26 +1.5 182,118 + EX28DRAFT_3516 0.57 -0.0 182,300 - EX28DRAFT_3516 0.70 -1.2 182,300 - EX28DRAFT_3516 0.70 +0.2 182,515 + EX28DRAFT_3516 0.85 +0.8 182,644 - -0.7 182,644 - -0.5 182,799 + -3.3 182,799 + -0.4 182,799 + +0.3 182,800 - +0.5 183,129 + EX28DRAFT_3517 0.79 +0.7 183,130 - EX28DRAFT_3517 0.79 +0.7 183,193 + +1.3 183,193 + -1.3 183,193 + +0.1 183,194 - -0.2 183,364 - EX28DRAFT_3518 0.44 -0.3 183,522 + EX28DRAFT_3518 0.84 +0.2 183,522 + EX28DRAFT_3518 0.84 -0.2 183,523 - EX28DRAFT_3518 0.84 +3.1 183,523 - EX28DRAFT_3518 0.84 -0.6 183,559 + +0.3 183,559 + -0.2 183,559 + -0.2 183,560 - -0.9 183,560 - -0.3 183,577 - -0.4 183,577 - +0.1 183,586 + +0.3
Or see this region's nucleotide sequence