Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3513 and EX28DRAFT_3514 are separated by 103 nucleotides EX28DRAFT_3514 and EX28DRAFT_3515 overlap by 14 nucleotides EX28DRAFT_3515 and EX28DRAFT_3516 are separated by 100 nucleotides
EX28DRAFT_3513: EX28DRAFT_3513 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 178,345 to 179,733
_3513
EX28DRAFT_3514: EX28DRAFT_3514 - alkylhydroperoxidase AhpD family core domain, at 179,837 to 180,316
_3514
EX28DRAFT_3515: EX28DRAFT_3515 - Transcriptional regulator, at 180,303 to 181,205
_3515
EX28DRAFT_3516: EX28DRAFT_3516 - NAD-dependent aldehyde dehydrogenases, at 181,306 to 182,721
_3516
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 179.786 kb on + strand at 179.786 kb on + strand at 179.866 kb on + strand at 179.981 kb on - strand, within EX28DRAFT_3514 at 179.981 kb on - strand, within EX28DRAFT_3514 at 180.045 kb on - strand, within EX28DRAFT_3514 at 180.385 kb on + strand at 180.385 kb on + strand at 180.385 kb on + strand at 180.386 kb on - strand at 180.423 kb on + strand, within EX28DRAFT_3515 at 180.426 kb on + strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.467 kb on - strand, within EX28DRAFT_3515 at 180.505 kb on - strand, within EX28DRAFT_3515 at 180.598 kb on + strand, within EX28DRAFT_3515 at 180.686 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.785 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 180.858 kb on - strand, within EX28DRAFT_3515 at 181.173 kb on + strand at 181.174 kb on - strand at 181.205 kb on + strand at 181.205 kb on + strand at 181.303 kb on + strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.304 kb on - strand at 181.305 kb on + strand at 181.305 kb on + strand at 181.306 kb on - strand at 181.306 kb on - strand at 181.329 kb on + strand at 181.329 kb on + strand at 181.330 kb on - strand at 181.580 kb on - strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.669 kb on + strand, within EX28DRAFT_3516 at 181.670 kb on - strand, within EX28DRAFT_3516 at 182.118 kb on + strand, within EX28DRAFT_3516
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 179,786 + -0.2 179,786 + -0.5 179,866 + -0.9 179,981 - EX28DRAFT_3514 0.30 -0.1 179,981 - EX28DRAFT_3514 0.30 -2.1 180,045 - EX28DRAFT_3514 0.43 -0.0 180,385 + -1.1 180,385 + +0.6 180,385 + +1.5 180,386 - +0.2 180,423 + EX28DRAFT_3515 0.13 +0.7 180,426 + EX28DRAFT_3515 0.14 -0.4 180,467 - EX28DRAFT_3515 0.18 +0.8 180,467 - EX28DRAFT_3515 0.18 +0.6 180,467 - EX28DRAFT_3515 0.18 -1.4 180,505 - EX28DRAFT_3515 0.22 -1.3 180,598 + EX28DRAFT_3515 0.33 -0.1 180,686 - EX28DRAFT_3515 0.42 +0.8 180,785 - EX28DRAFT_3515 0.53 +1.2 180,785 - EX28DRAFT_3515 0.53 +0.2 180,858 - EX28DRAFT_3515 0.61 +0.2 180,858 - EX28DRAFT_3515 0.61 +0.6 181,173 + +0.1 181,174 - -1.1 181,205 + +1.9 181,205 + +0.3 181,303 + +0.6 181,304 - +0.5 181,304 - +0.3 181,304 - -0.4 181,304 - +0.1 181,304 - +0.1 181,304 - +0.5 181,305 + -0.2 181,305 + +0.3 181,306 - -0.6 181,306 - +0.2 181,329 + +0.3 181,329 + +0.3 181,330 - -1.7 181,580 - EX28DRAFT_3516 0.19 -0.4 181,669 + EX28DRAFT_3516 0.26 +1.1 181,669 + EX28DRAFT_3516 0.26 +0.4 181,669 + EX28DRAFT_3516 0.26 +0.3 181,670 - EX28DRAFT_3516 0.26 +1.5 182,118 + EX28DRAFT_3516 0.57 -0.0
Or see this region's nucleotide sequence