Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3304

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3303 and EX28DRAFT_3304 are separated by 77 nucleotidesEX28DRAFT_3304 and EX28DRAFT_3305 are separated by 0 nucleotidesEX28DRAFT_3305 and EX28DRAFT_3306 are separated by 234 nucleotides EX28DRAFT_3303: EX28DRAFT_3303 - putative quinone oxidoreductase, YhdH/YhfP family, at 604,282 to 605,256 _3303 EX28DRAFT_3304: EX28DRAFT_3304 - Sulfite oxidase and related enzymes, at 605,334 to 606,335 _3304 EX28DRAFT_3305: EX28DRAFT_3305 - Predicted membrane protein, at 606,336 to 606,935 _3305 EX28DRAFT_3306: EX28DRAFT_3306 - 3-dehydroquinate dehydratase (EC 4.2.1.10), at 607,170 to 607,622 _3306 Position (kb) 605 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 604.402 kb on + strand, within EX28DRAFT_3303at 604.403 kb on - strand, within EX28DRAFT_3303at 604.405 kb on - strand, within EX28DRAFT_3303at 604.529 kb on + strand, within EX28DRAFT_3303at 604.529 kb on + strand, within EX28DRAFT_3303at 604.530 kb on - strand, within EX28DRAFT_3303at 604.530 kb on - strand, within EX28DRAFT_3303at 604.827 kb on + strand, within EX28DRAFT_3303at 604.838 kb on - strand, within EX28DRAFT_3303at 604.945 kb on - strand, within EX28DRAFT_3303at 605.206 kb on - strandat 605.366 kb on - strandat 605.389 kb on + strandat 605.577 kb on - strand, within EX28DRAFT_3304at 605.601 kb on + strand, within EX28DRAFT_3304at 605.751 kb on - strand, within EX28DRAFT_3304at 605.751 kb on - strand, within EX28DRAFT_3304at 605.754 kb on + strand, within EX28DRAFT_3304at 605.755 kb on - strand, within EX28DRAFT_3304at 605.856 kb on + strand, within EX28DRAFT_3304at 605.856 kb on + strand, within EX28DRAFT_3304at 605.941 kb on - strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.944 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.969 kb on + strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 605.970 kb on - strand, within EX28DRAFT_3304at 606.080 kb on + strand, within EX28DRAFT_3304at 606.080 kb on + strand, within EX28DRAFT_3304at 606.081 kb on - strand, within EX28DRAFT_3304at 606.086 kb on + strand, within EX28DRAFT_3304at 606.098 kb on + strand, within EX28DRAFT_3304at 606.099 kb on - strand, within EX28DRAFT_3304at 606.359 kb on + strandat 606.404 kb on + strand, within EX28DRAFT_3305at 606.404 kb on + strand, within EX28DRAFT_3305at 606.405 kb on - strand, within EX28DRAFT_3305at 606.405 kb on - strand, within EX28DRAFT_3305at 606.405 kb on - strand, within EX28DRAFT_3305at 606.405 kb on - strand, within EX28DRAFT_3305at 606.406 kb on + strand, within EX28DRAFT_3305at 606.406 kb on + strand, within EX28DRAFT_3305at 606.462 kb on - strand, within EX28DRAFT_3305at 606.462 kb on - strand, within EX28DRAFT_3305at 606.535 kb on - strand, within EX28DRAFT_3305at 606.580 kb on + strand, within EX28DRAFT_3305at 606.580 kb on + strand, within EX28DRAFT_3305at 606.618 kb on + strand, within EX28DRAFT_3305at 606.641 kb on + strand, within EX28DRAFT_3305at 606.684 kb on + strand, within EX28DRAFT_3305at 606.788 kb on + strand, within EX28DRAFT_3305at 606.799 kb on - strand, within EX28DRAFT_3305at 606.908 kb on + strandat 606.909 kb on - strandat 606.909 kb on - strandat 606.933 kb on + strandat 606.934 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
remove
604,402 + EX28DRAFT_3303 0.12 +0.3
604,403 - EX28DRAFT_3303 0.12 +0.1
604,405 - EX28DRAFT_3303 0.13 -0.7
604,529 + EX28DRAFT_3303 0.25 -0.2
604,529 + EX28DRAFT_3303 0.25 +0.2
604,530 - EX28DRAFT_3303 0.25 +0.4
604,530 - EX28DRAFT_3303 0.25 -0.6
604,827 + EX28DRAFT_3303 0.56 -0.4
604,838 - EX28DRAFT_3303 0.57 -1.1
604,945 - EX28DRAFT_3303 0.68 -0.3
605,206 - +0.7
605,366 - -0.3
605,389 + -0.1
605,577 - EX28DRAFT_3304 0.24 -0.2
605,601 + EX28DRAFT_3304 0.27 +0.1
605,751 - EX28DRAFT_3304 0.42 +0.6
605,751 - EX28DRAFT_3304 0.42 +0.3
605,754 + EX28DRAFT_3304 0.42 +1.4
605,755 - EX28DRAFT_3304 0.42 +0.8
605,856 + EX28DRAFT_3304 0.52 +0.3
605,856 + EX28DRAFT_3304 0.52 -0.2
605,941 - EX28DRAFT_3304 0.61 +0.5
605,944 + EX28DRAFT_3304 0.61 -0.4
605,944 + EX28DRAFT_3304 0.61 +0.1
605,944 + EX28DRAFT_3304 0.61 -0.6
605,944 + EX28DRAFT_3304 0.61 -0.3
605,944 + EX28DRAFT_3304 0.61 -0.1
605,969 + EX28DRAFT_3304 0.63 +2.7
605,969 + EX28DRAFT_3304 0.63 -0.1
605,969 + EX28DRAFT_3304 0.63 -0.6
605,969 + EX28DRAFT_3304 0.63 +1.4
605,970 - EX28DRAFT_3304 0.63 -0.8
605,970 - EX28DRAFT_3304 0.63 -0.6
605,970 - EX28DRAFT_3304 0.63 -0.0
605,970 - EX28DRAFT_3304 0.63 -0.7
605,970 - EX28DRAFT_3304 0.63 -0.7
605,970 - EX28DRAFT_3304 0.63 -1.5
606,080 + EX28DRAFT_3304 0.74 +1.4
606,080 + EX28DRAFT_3304 0.74 -0.6
606,081 - EX28DRAFT_3304 0.75 +0.7
606,086 + EX28DRAFT_3304 0.75 -0.2
606,098 + EX28DRAFT_3304 0.76 -0.8
606,099 - EX28DRAFT_3304 0.76 -1.8
606,359 + +0.1
606,404 + EX28DRAFT_3305 0.11 -0.4
606,404 + EX28DRAFT_3305 0.11 +0.3
606,405 - EX28DRAFT_3305 0.12 -0.2
606,405 - EX28DRAFT_3305 0.12 -0.0
606,405 - EX28DRAFT_3305 0.12 +0.6
606,405 - EX28DRAFT_3305 0.12 -2.2
606,406 + EX28DRAFT_3305 0.12 +0.0
606,406 + EX28DRAFT_3305 0.12 -0.1
606,462 - EX28DRAFT_3305 0.21 -0.2
606,462 - EX28DRAFT_3305 0.21 +0.2
606,535 - EX28DRAFT_3305 0.33 +0.2
606,580 + EX28DRAFT_3305 0.41 +0.1
606,580 + EX28DRAFT_3305 0.41 -0.2
606,618 + EX28DRAFT_3305 0.47 +0.4
606,641 + EX28DRAFT_3305 0.51 +0.4
606,684 + EX28DRAFT_3305 0.58 -0.5
606,788 + EX28DRAFT_3305 0.75 +0.4
606,799 - EX28DRAFT_3305 0.77 +0.2
606,908 + +0.1
606,909 - -0.4
606,909 - +0.1
606,933 + -0.4
606,934 - +1.1

Or see this region's nucleotide sequence