Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3195

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3194 and EX28DRAFT_3195 are separated by 67 nucleotidesEX28DRAFT_3195 and EX28DRAFT_3196 are separated by 62 nucleotides EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332 _3194 EX28DRAFT_3195: EX28DRAFT_3195 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 496,400 to 497,263 _3195 EX28DRAFT_3196: EX28DRAFT_3196 - LppC putative lipoprotein, at 497,326 to 499,488 _3196 Position (kb) 496 497 498Strain fitness (log2 ratio) -2 -1 0 1at 495.463 kb on + strand, within EX28DRAFT_3194at 495.469 kb on - strand, within EX28DRAFT_3194at 495.498 kb on - strand, within EX28DRAFT_3194at 495.516 kb on + strand, within EX28DRAFT_3194at 495.517 kb on - strand, within EX28DRAFT_3194at 495.558 kb on + strand, within EX28DRAFT_3194at 495.561 kb on + strand, within EX28DRAFT_3194at 495.642 kb on + strand, within EX28DRAFT_3194at 495.642 kb on + strand, within EX28DRAFT_3194at 495.643 kb on - strand, within EX28DRAFT_3194at 495.688 kb on + strand, within EX28DRAFT_3194at 495.689 kb on - strand, within EX28DRAFT_3194at 495.730 kb on + strand, within EX28DRAFT_3194at 495.785 kb on - strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.955 kb on + strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.956 kb on - strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.957 kb on + strand, within EX28DRAFT_3194at 495.958 kb on - strand, within EX28DRAFT_3194at 496.160 kb on - strandat 496.163 kb on - strandat 496.173 kb on - strandat 496.232 kb on - strandat 496.232 kb on - strandat 496.240 kb on - strandat 496.263 kb on + strandat 496.282 kb on - strandat 496.326 kb on + strandat 496.326 kb on + strandat 496.342 kb on - strandat 496.425 kb on + strandat 496.429 kb on + strandat 496.429 kb on + strandat 496.430 kb on - strandat 496.430 kb on - strandat 496.430 kb on - strandat 496.431 kb on + strandat 496.432 kb on - strandat 496.558 kb on + strand, within EX28DRAFT_3195at 496.558 kb on + strand, within EX28DRAFT_3195at 496.558 kb on + strand, within EX28DRAFT_3195at 496.721 kb on - strand, within EX28DRAFT_3195at 496.721 kb on - strand, within EX28DRAFT_3195at 496.796 kb on + strand, within EX28DRAFT_3195at 496.796 kb on + strand, within EX28DRAFT_3195at 496.942 kb on + strand, within EX28DRAFT_3195at 496.942 kb on + strand, within EX28DRAFT_3195at 496.943 kb on - strand, within EX28DRAFT_3195at 497.213 kb on + strandat 497.213 kb on + strandat 497.220 kb on + strandat 497.220 kb on + strandat 497.220 kb on + strandat 497.221 kb on - strandat 497.240 kb on - strandat 497.276 kb on - strandat 497.286 kb on + strandat 497.331 kb on - strandat 497.473 kb on + strandat 497.650 kb on - strand, within EX28DRAFT_3196at 497.668 kb on + strand, within EX28DRAFT_3196at 497.989 kb on - strand, within EX28DRAFT_3196

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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495,463 + EX28DRAFT_3194 0.54 -0.6
495,469 - EX28DRAFT_3194 0.54 +0.1
495,498 - EX28DRAFT_3194 0.56 -0.1
495,516 + EX28DRAFT_3194 0.57 -0.3
495,517 - EX28DRAFT_3194 0.57 +0.0
495,558 + EX28DRAFT_3194 0.59 +0.1
495,561 + EX28DRAFT_3194 0.59 +0.9
495,642 + EX28DRAFT_3194 0.63 +0.4
495,642 + EX28DRAFT_3194 0.63 -1.0
495,643 - EX28DRAFT_3194 0.63 +0.2
495,688 + EX28DRAFT_3194 0.66 +0.3
495,689 - EX28DRAFT_3194 0.66 -0.8
495,730 + EX28DRAFT_3194 0.68 +0.3
495,785 - EX28DRAFT_3194 0.71 -0.6
495,955 + EX28DRAFT_3194 0.80 -0.4
495,955 + EX28DRAFT_3194 0.80 -0.4
495,955 + EX28DRAFT_3194 0.80 -0.3
495,955 + EX28DRAFT_3194 0.80 +0.4
495,955 + EX28DRAFT_3194 0.80 -0.1
495,955 + EX28DRAFT_3194 0.80 -1.3
495,956 - EX28DRAFT_3194 0.80 -0.2
495,956 - EX28DRAFT_3194 0.80 +0.6
495,956 - EX28DRAFT_3194 0.80 +0.0
495,956 - EX28DRAFT_3194 0.80 +0.3
495,956 - EX28DRAFT_3194 0.80 +0.1
495,957 + EX28DRAFT_3194 0.80 +0.9
495,957 + EX28DRAFT_3194 0.80 -0.3
495,957 + EX28DRAFT_3194 0.80 -0.7
495,957 + EX28DRAFT_3194 0.80 -0.3
495,957 + EX28DRAFT_3194 0.80 +1.3
495,958 - EX28DRAFT_3194 0.80 +0.5
496,160 - +0.3
496,163 - -0.3
496,173 - -0.7
496,232 - -0.4
496,232 - +0.1
496,240 - -0.2
496,263 + +0.2
496,282 - +0.9
496,326 + +0.6
496,326 + +0.3
496,342 - -1.9
496,425 + +0.0
496,429 + +0.4
496,429 + -0.5
496,430 - +0.0
496,430 - -0.3
496,430 - -0.5
496,431 + -0.9
496,432 - +0.4
496,558 + EX28DRAFT_3195 0.18 -0.1
496,558 + EX28DRAFT_3195 0.18 -1.3
496,558 + EX28DRAFT_3195 0.18 -2.3
496,721 - EX28DRAFT_3195 0.37 -1.0
496,721 - EX28DRAFT_3195 0.37 -1.0
496,796 + EX28DRAFT_3195 0.46 -1.2
496,796 + EX28DRAFT_3195 0.46 -0.6
496,942 + EX28DRAFT_3195 0.63 -1.3
496,942 + EX28DRAFT_3195 0.63 +0.2
496,943 - EX28DRAFT_3195 0.63 -2.1
497,213 + -0.9
497,213 + +0.2
497,220 + -0.4
497,220 + -1.5
497,220 + -1.0
497,221 - -0.4
497,240 - -0.1
497,276 - -1.0
497,286 + -1.2
497,331 - +0.1
497,473 + -0.1
497,650 - EX28DRAFT_3196 0.15 -0.0
497,668 + EX28DRAFT_3196 0.16 +0.2
497,989 - EX28DRAFT_3196 0.31 -0.8

Or see this region's nucleotide sequence