Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3116

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3114 and EX28DRAFT_3115 overlap by 17 nucleotidesEX28DRAFT_3115 and EX28DRAFT_3116 overlap by 1 nucleotidesEX28DRAFT_3116 and EX28DRAFT_3117 overlap by 4 nucleotidesEX28DRAFT_3117 and EX28DRAFT_3118 overlap by 8 nucleotides EX28DRAFT_3114: EX28DRAFT_3114 - Caudovirales tail fibre assembly protein, at 422,256 to 422,651 _3114 EX28DRAFT_3115: EX28DRAFT_3115 - Caudovirales tail fibre assembly protein, at 422,635 to 423,231 _3115 EX28DRAFT_3116: EX28DRAFT_3116 - Phage-related tail fibre protein, at 423,231 to 424,316 _3116 EX28DRAFT_3117: EX28DRAFT_3117 - phage tail protein, P2 protein I family, at 424,313 to 424,921 _3117 EX28DRAFT_3118: EX28DRAFT_3118 - Phage-related baseplate assembly protein, at 424,914 to 425,822 _3118 Position (kb) 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 422.243 kb on + strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.244 kb on - strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.245 kb on + strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.246 kb on - strandat 422.302 kb on + strand, within EX28DRAFT_3114at 422.302 kb on + strand, within EX28DRAFT_3114at 422.303 kb on - strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.312 kb on + strand, within EX28DRAFT_3114at 422.313 kb on - strand, within EX28DRAFT_3114at 422.337 kb on - strand, within EX28DRAFT_3114at 422.347 kb on + strand, within EX28DRAFT_3114at 422.493 kb on - strand, within EX28DRAFT_3114at 422.560 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.577 kb on + strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.578 kb on - strand, within EX28DRAFT_3114at 422.579 kb on + strand, within EX28DRAFT_3114at 422.604 kb on - strand, within EX28DRAFT_3114at 422.650 kb on - strandat 422.661 kb on + strandat 422.661 kb on + strandat 422.701 kb on + strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.702 kb on - strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.705 kb on + strand, within EX28DRAFT_3115at 422.706 kb on - strand, within EX28DRAFT_3115at 422.733 kb on + strand, within EX28DRAFT_3115at 422.755 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.761 kb on + strand, within EX28DRAFT_3115at 422.762 kb on - strand, within EX28DRAFT_3115at 422.776 kb on + strand, within EX28DRAFT_3115at 422.777 kb on - strand, within EX28DRAFT_3115at 422.778 kb on + strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.779 kb on - strand, within EX28DRAFT_3115at 422.806 kb on + strand, within EX28DRAFT_3115at 422.859 kb on + strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.860 kb on - strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.880 kb on + strand, within EX28DRAFT_3115at 422.881 kb on - strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.900 kb on + strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.901 kb on - strand, within EX28DRAFT_3115at 422.984 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.012 kb on + strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.013 kb on - strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.014 kb on + strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.015 kb on - strand, within EX28DRAFT_3115at 423.027 kb on + strand, within EX28DRAFT_3115at 423.028 kb on - strand, within EX28DRAFT_3115at 423.046 kb on + strand, within EX28DRAFT_3115at 423.047 kb on - strand, within EX28DRAFT_3115at 423.051 kb on + strand, within EX28DRAFT_3115at 423.143 kb on + strand, within EX28DRAFT_3115at 423.178 kb on + strandat 423.178 kb on + strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.179 kb on - strandat 423.181 kb on - strandat 423.181 kb on - strandat 423.195 kb on + strandat 423.196 kb on - strandat 423.202 kb on - strandat 423.202 kb on - strandat 423.255 kb on - strandat 423.353 kb on + strand, within EX28DRAFT_3116at 423.354 kb on - strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.356 kb on + strand, within EX28DRAFT_3116at 423.357 kb on - strand, within EX28DRAFT_3116at 423.384 kb on - strand, within EX28DRAFT_3116at 423.402 kb on - strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.516 kb on + strand, within EX28DRAFT_3116at 423.517 kb on - strand, within EX28DRAFT_3116at 423.517 kb on - strand, within EX28DRAFT_3116at 423.575 kb on - strand, within EX28DRAFT_3116at 423.757 kb on - strand, within EX28DRAFT_3116at 423.779 kb on - strand, within EX28DRAFT_3116at 423.805 kb on + strand, within EX28DRAFT_3116at 423.807 kb on - strand, within EX28DRAFT_3116at 423.807 kb on - strand, within EX28DRAFT_3116at 423.855 kb on - strand, within EX28DRAFT_3116at 423.988 kb on + strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 423.989 kb on - strand, within EX28DRAFT_3116at 424.082 kb on + strand, within EX28DRAFT_3116at 424.082 kb on + strand, within EX28DRAFT_3116at 424.083 kb on - strand, within EX28DRAFT_3116at 424.244 kb on + strandat 424.303 kb on + strandat 424.365 kb on + strandat 424.365 kb on + strandat 424.366 kb on - strandat 424.366 kb on - strandat 424.381 kb on + strand, within EX28DRAFT_3117at 424.381 kb on + strand, within EX28DRAFT_3117at 424.381 kb on + strand, within EX28DRAFT_3117at 424.397 kb on - strand, within EX28DRAFT_3117at 424.399 kb on - strand, within EX28DRAFT_3117at 424.399 kb on - strand, within EX28DRAFT_3117at 424.429 kb on - strand, within EX28DRAFT_3117at 424.447 kb on - strand, within EX28DRAFT_3117at 424.490 kb on - strand, within EX28DRAFT_3117at 424.495 kb on + strand, within EX28DRAFT_3117at 424.495 kb on + strand, within EX28DRAFT_3117at 424.495 kb on + strand, within EX28DRAFT_3117at 424.496 kb on - strand, within EX28DRAFT_3117at 424.496 kb on - strand, within EX28DRAFT_3117at 424.496 kb on - strand, within EX28DRAFT_3117at 424.711 kb on + strand, within EX28DRAFT_3117at 424.711 kb on + strand, within EX28DRAFT_3117at 424.711 kb on + strand, within EX28DRAFT_3117at 424.711 kb on + strand, within EX28DRAFT_3117at 424.824 kb on + strand, within EX28DRAFT_3117at 424.980 kb on + strandat 424.981 kb on - strandat 424.981 kb on - strandat 424.981 kb on - strandat 425.044 kb on + strand, within EX28DRAFT_3118at 425.044 kb on + strand, within EX28DRAFT_3118at 425.045 kb on - strand, within EX28DRAFT_3118at 425.093 kb on + strand, within EX28DRAFT_3118at 425.095 kb on + strand, within EX28DRAFT_3118at 425.096 kb on - strand, within EX28DRAFT_3118at 425.096 kb on - strand, within EX28DRAFT_3118at 425.158 kb on + strand, within EX28DRAFT_3118at 425.158 kb on + strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.185 kb on - strand, within EX28DRAFT_3118at 425.243 kb on + strand, within EX28DRAFT_3118at 425.243 kb on + strand, within EX28DRAFT_3118at 425.244 kb on - strand, within EX28DRAFT_3118

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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422,243 + -0.2
422,244 - +0.1
422,244 - -1.7
422,244 - -0.8
422,245 + +0.0
422,245 + -0.8
422,245 + -0.5
422,245 + -0.2
422,245 + +0.7
422,245 + -0.1
422,246 - -1.1
422,246 - -1.1
422,246 - -1.2
422,246 - -0.8
422,246 - -0.5
422,246 - -1.8
422,302 + EX28DRAFT_3114 0.12 -0.4
422,302 + EX28DRAFT_3114 0.12 +0.7
422,303 - EX28DRAFT_3114 0.12 -0.8
422,312 + EX28DRAFT_3114 0.14 -0.9
422,312 + EX28DRAFT_3114 0.14 -3.3
422,313 - EX28DRAFT_3114 0.14 +0.1
422,337 - EX28DRAFT_3114 0.20 +3.0
422,347 + EX28DRAFT_3114 0.23 +2.4
422,493 - EX28DRAFT_3114 0.60 +0.2
422,560 + EX28DRAFT_3114 0.77 +0.1
422,577 + EX28DRAFT_3114 0.81 -1.6
422,577 + EX28DRAFT_3114 0.81 -0.6
422,578 - EX28DRAFT_3114 0.81 -1.1
422,578 - EX28DRAFT_3114 0.81 +0.3
422,579 + EX28DRAFT_3114 0.82 -0.4
422,604 - EX28DRAFT_3114 0.88 -0.5
422,650 - -0.2
422,661 + +0.1
422,661 + -2.1
422,701 + EX28DRAFT_3115 0.11 +2.2
422,702 - EX28DRAFT_3115 0.11 +4.9
422,702 - EX28DRAFT_3115 0.11 +0.3
422,702 - EX28DRAFT_3115 0.11 +0.2
422,705 + EX28DRAFT_3115 0.12 +0.2
422,705 + EX28DRAFT_3115 0.12 +1.0
422,706 - EX28DRAFT_3115 0.12 -0.6
422,733 + EX28DRAFT_3115 0.16 -0.3
422,755 + EX28DRAFT_3115 0.20 +0.5
422,761 + EX28DRAFT_3115 0.21 +0.4
422,761 + EX28DRAFT_3115 0.21 +0.2
422,761 + EX28DRAFT_3115 0.21 -1.6
422,762 - EX28DRAFT_3115 0.21 +2.2
422,776 + EX28DRAFT_3115 0.24 -0.0
422,777 - EX28DRAFT_3115 0.24 -0.2
422,778 + EX28DRAFT_3115 0.24 -0.7
422,779 - EX28DRAFT_3115 0.24 -0.8
422,779 - EX28DRAFT_3115 0.24 +0.2
422,779 - EX28DRAFT_3115 0.24 -0.3
422,779 - EX28DRAFT_3115 0.24 +0.6
422,779 - EX28DRAFT_3115 0.24 -1.1
422,779 - EX28DRAFT_3115 0.24 -0.1
422,806 + EX28DRAFT_3115 0.29 +1.6
422,859 + EX28DRAFT_3115 0.38 -0.1
422,860 - EX28DRAFT_3115 0.38 -0.3
422,860 - EX28DRAFT_3115 0.38 -0.4
422,880 + EX28DRAFT_3115 0.41 +0.0
422,880 + EX28DRAFT_3115 0.41 -0.9
422,881 - EX28DRAFT_3115 0.41 -0.8
422,900 + EX28DRAFT_3115 0.44 -1.3
422,900 + EX28DRAFT_3115 0.44 +0.0
422,901 - EX28DRAFT_3115 0.45 +0.2
422,901 - EX28DRAFT_3115 0.45 +0.1
422,901 - EX28DRAFT_3115 0.45 +0.1
422,901 - EX28DRAFT_3115 0.45 +0.0
422,901 - EX28DRAFT_3115 0.45 -0.6
422,984 + EX28DRAFT_3115 0.58 -0.1
423,012 + EX28DRAFT_3115 0.63 -0.6
423,012 + EX28DRAFT_3115 0.63 -0.6
423,013 - EX28DRAFT_3115 0.63 -0.2
423,013 - EX28DRAFT_3115 0.63 +0.1
423,013 - EX28DRAFT_3115 0.63 -0.6
423,014 + EX28DRAFT_3115 0.63 -1.0
423,014 + EX28DRAFT_3115 0.63 -0.4
423,015 - EX28DRAFT_3115 0.64 +0.2
423,015 - EX28DRAFT_3115 0.64 +0.1
423,027 + EX28DRAFT_3115 0.66 -0.1
423,028 - EX28DRAFT_3115 0.66 +0.0
423,046 + EX28DRAFT_3115 0.69 -0.1
423,047 - EX28DRAFT_3115 0.69 -2.1
423,051 + EX28DRAFT_3115 0.70 +0.1
423,143 + EX28DRAFT_3115 0.85 -0.4
423,178 + -0.4
423,178 + +0.4
423,179 - -1.6
423,179 - -0.2
423,179 - -0.4
423,179 - -2.5
423,179 - -0.5
423,179 - -1.6
423,181 - -0.0
423,181 - -0.7
423,195 + -1.1
423,196 - -0.2
423,202 - -0.2
423,202 - -0.7
423,255 - -0.6
423,353 + EX28DRAFT_3116 0.11 -0.5
423,354 - EX28DRAFT_3116 0.11 -0.2
423,356 + EX28DRAFT_3116 0.12 -0.3
423,356 + EX28DRAFT_3116 0.12 -0.1
423,356 + EX28DRAFT_3116 0.12 -0.6
423,357 - EX28DRAFT_3116 0.12 +1.7
423,384 - EX28DRAFT_3116 0.14 -1.5
423,402 - EX28DRAFT_3116 0.16 -1.0
423,516 + EX28DRAFT_3116 0.26 -0.4
423,516 + EX28DRAFT_3116 0.26 +0.4
423,516 + EX28DRAFT_3116 0.26 -0.2
423,516 + EX28DRAFT_3116 0.26 -0.7
423,516 + EX28DRAFT_3116 0.26 -0.3
423,516 + EX28DRAFT_3116 0.26 -0.4
423,517 - EX28DRAFT_3116 0.26 -0.0
423,517 - EX28DRAFT_3116 0.26 +0.1
423,575 - EX28DRAFT_3116 0.32 +0.4
423,757 - EX28DRAFT_3116 0.48 -0.6
423,779 - EX28DRAFT_3116 0.50 +0.4
423,805 + EX28DRAFT_3116 0.53 +0.1
423,807 - EX28DRAFT_3116 0.53 -0.1
423,807 - EX28DRAFT_3116 0.53 -1.7
423,855 - EX28DRAFT_3116 0.57 +0.9
423,988 + EX28DRAFT_3116 0.70 -0.2
423,989 - EX28DRAFT_3116 0.70 +0.8
423,989 - EX28DRAFT_3116 0.70 -0.9
423,989 - EX28DRAFT_3116 0.70 -0.4
423,989 - EX28DRAFT_3116 0.70 +0.3
423,989 - EX28DRAFT_3116 0.70 -1.3
424,082 + EX28DRAFT_3116 0.78 -1.2
424,082 + EX28DRAFT_3116 0.78 -0.6
424,083 - EX28DRAFT_3116 0.78 -0.3
424,244 + +2.6
424,303 + -0.3
424,365 + -1.2
424,365 + +1.8
424,366 - +0.0
424,366 - +0.4
424,381 + EX28DRAFT_3117 0.11 -0.4
424,381 + EX28DRAFT_3117 0.11 -0.3
424,381 + EX28DRAFT_3117 0.11 +0.1
424,397 - EX28DRAFT_3117 0.14 -0.0
424,399 - EX28DRAFT_3117 0.14 -0.9
424,399 - EX28DRAFT_3117 0.14 -2.2
424,429 - EX28DRAFT_3117 0.19 -0.5
424,447 - EX28DRAFT_3117 0.22 -2.0
424,490 - EX28DRAFT_3117 0.29 -0.5
424,495 + EX28DRAFT_3117 0.30 -0.1
424,495 + EX28DRAFT_3117 0.30 -0.6
424,495 + EX28DRAFT_3117 0.30 +0.2
424,496 - EX28DRAFT_3117 0.30 -0.5
424,496 - EX28DRAFT_3117 0.30 -0.6
424,496 - EX28DRAFT_3117 0.30 +0.4
424,711 + EX28DRAFT_3117 0.65 -0.3
424,711 + EX28DRAFT_3117 0.65 +0.0
424,711 + EX28DRAFT_3117 0.65 -0.1
424,711 + EX28DRAFT_3117 0.65 +0.9
424,824 + EX28DRAFT_3117 0.84 -0.1
424,980 + -0.3
424,981 - -1.1
424,981 - +2.0
424,981 - -0.4
425,044 + EX28DRAFT_3118 0.14 -1.5
425,044 + EX28DRAFT_3118 0.14 +1.0
425,045 - EX28DRAFT_3118 0.14 -1.5
425,093 + EX28DRAFT_3118 0.20 -0.1
425,095 + EX28DRAFT_3118 0.20 -1.5
425,096 - EX28DRAFT_3118 0.20 +0.5
425,096 - EX28DRAFT_3118 0.20 -1.7
425,158 + EX28DRAFT_3118 0.27 -2.7
425,158 + EX28DRAFT_3118 0.27 -0.5
425,159 - EX28DRAFT_3118 0.27 -1.7
425,159 - EX28DRAFT_3118 0.27 +0.0
425,159 - EX28DRAFT_3118 0.27 -0.7
425,185 - EX28DRAFT_3118 0.30 -0.2
425,243 + EX28DRAFT_3118 0.36 -0.6
425,243 + EX28DRAFT_3118 0.36 +0.8
425,244 - EX28DRAFT_3118 0.36 +0.1

Or see this region's nucleotide sequence