Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2953

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2951 and EX28DRAFT_2952 are separated by 51 nucleotidesEX28DRAFT_2952 and EX28DRAFT_2953 are separated by 116 nucleotidesEX28DRAFT_2953 and EX28DRAFT_2954 are separated by 76 nucleotidesEX28DRAFT_2954 and EX28DRAFT_2955 are separated by 70 nucleotides EX28DRAFT_2951: EX28DRAFT_2951 - Uncharacterized protein conserved in bacteria, at 260,402 to 260,713 _2951 EX28DRAFT_2952: EX28DRAFT_2952 - transcriptional regulator, RpiR family, at 260,765 to 261,496 _2952 EX28DRAFT_2953: EX28DRAFT_2953 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 261,613 to 263,046 _2953 EX28DRAFT_2954: EX28DRAFT_2954 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 263,123 to 263,866 _2954 EX28DRAFT_2955: EX28DRAFT_2955 - glycine dehydrogenase (decarboxylating), at 263,937 to 266,810 _2955 Position (kb) 261 262 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 260.717 kb on - strandat 260.752 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.823 kb on - strandat 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.852 kb on + strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.853 kb on - strand, within EX28DRAFT_2952at 260.927 kb on - strand, within EX28DRAFT_2952at 261.066 kb on + strand, within EX28DRAFT_2952at 261.082 kb on + strand, within EX28DRAFT_2952at 261.106 kb on + strand, within EX28DRAFT_2952at 261.108 kb on + strand, within EX28DRAFT_2952at 261.203 kb on + strand, within EX28DRAFT_2952at 261.332 kb on - strand, within EX28DRAFT_2952at 261.373 kb on + strand, within EX28DRAFT_2952at 261.446 kb on + strandat 261.449 kb on - strandat 261.518 kb on - strandat 261.544 kb on + strandat 261.588 kb on - strandat 261.770 kb on + strand, within EX28DRAFT_2953at 261.771 kb on - strand, within EX28DRAFT_2953at 261.771 kb on - strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.784 kb on + strand, within EX28DRAFT_2953at 261.785 kb on - strand, within EX28DRAFT_2953at 261.823 kb on + strand, within EX28DRAFT_2953at 261.823 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.825 kb on + strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.826 kb on - strand, within EX28DRAFT_2953at 261.977 kb on - strand, within EX28DRAFT_2953at 262.039 kb on + strand, within EX28DRAFT_2953at 262.040 kb on - strand, within EX28DRAFT_2953at 262.126 kb on + strand, within EX28DRAFT_2953at 262.208 kb on - strand, within EX28DRAFT_2953at 262.210 kb on - strand, within EX28DRAFT_2953at 262.240 kb on + strand, within EX28DRAFT_2953at 262.408 kb on + strand, within EX28DRAFT_2953at 262.438 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.451 kb on - strand, within EX28DRAFT_2953at 262.527 kb on + strand, within EX28DRAFT_2953at 262.538 kb on - strand, within EX28DRAFT_2953at 262.541 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.684 kb on + strand, within EX28DRAFT_2953at 262.702 kb on + strand, within EX28DRAFT_2953at 262.703 kb on - strand, within EX28DRAFT_2953at 262.728 kb on + strand, within EX28DRAFT_2953at 262.938 kb on + strandat 262.943 kb on - strandat 263.010 kb on + strandat 263.010 kb on + strandat 263.081 kb on + strandat 263.082 kb on - strandat 263.092 kb on + strandat 263.093 kb on - strandat 263.144 kb on + strandat 263.159 kb on + strandat 263.298 kb on + strand, within EX28DRAFT_2954at 263.315 kb on + strand, within EX28DRAFT_2954at 263.316 kb on - strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.611 kb on + strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.758 kb on + strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.772 kb on + strand, within EX28DRAFT_2954at 263.791 kb on - strand, within EX28DRAFT_2954at 263.916 kb on + strandat 263.916 kb on + strandat 263.922 kb on - strandat 263.922 kb on - strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.935 kb on + strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.938 kb on + strandat 263.939 kb on - strandat 263.944 kb on + strandat 263.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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260,717 - +0.0
260,752 - -0.3
260,822 + -0.4
260,822 + -0.5
260,822 + +0.5
260,822 + -2.9
260,823 - +0.7
260,823 - +0.7
260,823 - +0.8
260,823 - -1.0
260,852 + EX28DRAFT_2952 0.12 -2.5
260,852 + EX28DRAFT_2952 0.12 +0.0
260,852 + EX28DRAFT_2952 0.12 +0.2
260,853 - EX28DRAFT_2952 0.12 -1.5
260,853 - EX28DRAFT_2952 0.12 +0.9
260,853 - EX28DRAFT_2952 0.12 +0.9
260,853 - EX28DRAFT_2952 0.12 -1.6
260,927 - EX28DRAFT_2952 0.22 -0.0
261,066 + EX28DRAFT_2952 0.41 +0.1
261,082 + EX28DRAFT_2952 0.43 -0.0
261,106 + EX28DRAFT_2952 0.47 +1.2
261,108 + EX28DRAFT_2952 0.47 -1.0
261,203 + EX28DRAFT_2952 0.60 +0.1
261,332 - EX28DRAFT_2952 0.77 -1.2
261,373 + EX28DRAFT_2952 0.83 +0.1
261,446 + +1.5
261,449 - +1.9
261,518 - -0.7
261,544 + -0.1
261,588 - +0.4
261,770 + EX28DRAFT_2953 0.11 -0.1
261,771 - EX28DRAFT_2953 0.11 +0.8
261,771 - EX28DRAFT_2953 0.11 -0.1
261,784 + EX28DRAFT_2953 0.12 +1.4
261,784 + EX28DRAFT_2953 0.12 +0.5
261,784 + EX28DRAFT_2953 0.12 +0.9
261,785 - EX28DRAFT_2953 0.12 -2.2
261,823 + EX28DRAFT_2953 0.15 +0.6
261,823 + EX28DRAFT_2953 0.15 +0.1
261,825 + EX28DRAFT_2953 0.15 +0.8
261,825 + EX28DRAFT_2953 0.15 +0.2
261,825 + EX28DRAFT_2953 0.15 -0.4
261,826 - EX28DRAFT_2953 0.15 -0.2
261,826 - EX28DRAFT_2953 0.15 +0.7
261,826 - EX28DRAFT_2953 0.15 -0.2
261,977 - EX28DRAFT_2953 0.25 +0.3
262,039 + EX28DRAFT_2953 0.30 -0.5
262,040 - EX28DRAFT_2953 0.30 -0.9
262,126 + EX28DRAFT_2953 0.36 +0.1
262,208 - EX28DRAFT_2953 0.41 -0.1
262,210 - EX28DRAFT_2953 0.42 +0.2
262,240 + EX28DRAFT_2953 0.44 -0.2
262,408 + EX28DRAFT_2953 0.55 -0.0
262,438 + EX28DRAFT_2953 0.58 +0.7
262,450 + EX28DRAFT_2953 0.58 +2.0
262,450 + EX28DRAFT_2953 0.58 +0.3
262,451 - EX28DRAFT_2953 0.58 +0.9
262,527 + EX28DRAFT_2953 0.64 +0.1
262,538 - EX28DRAFT_2953 0.65 -0.4
262,541 + EX28DRAFT_2953 0.65 +0.4
262,555 + EX28DRAFT_2953 0.66 +0.3
262,555 + EX28DRAFT_2953 0.66 -0.7
262,555 + EX28DRAFT_2953 0.66 +0.6
262,555 + EX28DRAFT_2953 0.66 +2.3
262,555 + EX28DRAFT_2953 0.66 -0.1
262,556 - EX28DRAFT_2953 0.66 -0.7
262,556 - EX28DRAFT_2953 0.66 -0.3
262,556 - EX28DRAFT_2953 0.66 +0.7
262,556 - EX28DRAFT_2953 0.66 +0.0
262,556 - EX28DRAFT_2953 0.66 -0.0
262,684 + EX28DRAFT_2953 0.75 -0.3
262,702 + EX28DRAFT_2953 0.76 +0.1
262,703 - EX28DRAFT_2953 0.76 -0.0
262,728 + EX28DRAFT_2953 0.78 -1.2
262,938 + -0.5
262,943 - -0.3
263,010 + +0.6
263,010 + +0.0
263,081 + -0.8
263,082 - +0.2
263,092 + -1.3
263,093 - -1.6
263,144 + +0.2
263,159 + +0.7
263,298 + EX28DRAFT_2954 0.24 +0.5
263,315 + EX28DRAFT_2954 0.26 -0.7
263,316 - EX28DRAFT_2954 0.26 -0.1
263,409 + EX28DRAFT_2954 0.38 -0.4
263,409 + EX28DRAFT_2954 0.38 +0.8
263,410 - EX28DRAFT_2954 0.39 +4.9
263,410 - EX28DRAFT_2954 0.39 +0.4
263,611 + EX28DRAFT_2954 0.66 +0.9
263,714 - EX28DRAFT_2954 0.79 +0.6
263,714 - EX28DRAFT_2954 0.79 -0.3
263,758 + EX28DRAFT_2954 0.85 +0.2
263,759 - EX28DRAFT_2954 0.85 -2.9
263,759 - EX28DRAFT_2954 0.85 +0.7
263,772 + EX28DRAFT_2954 0.87 -0.1
263,791 - EX28DRAFT_2954 0.90 +0.3
263,916 + +1.0
263,916 + +0.4
263,922 - -0.5
263,922 - -0.2
263,924 + +0.0
263,924 + +0.5
263,924 + -0.6
263,924 + +0.4
263,925 - -0.1
263,925 - -0.9
263,925 - +0.4
263,925 - +2.3
263,925 - +0.0
263,935 + +1.4
263,936 - +0.2
263,936 - +0.9
263,936 - -0.1
263,938 + -1.6
263,939 - -0.5
263,944 + +0.1
263,990 - -1.6

Or see this region's nucleotide sequence