Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2921

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2920 and EX28DRAFT_2921 are separated by 313 nucleotidesEX28DRAFT_2921 and EX28DRAFT_2922 are separated by 63 nucleotides EX28DRAFT_2920: EX28DRAFT_2920 - MFS transporter, sugar porter (SP) family, at 230,815 to 232,236 _2920 EX28DRAFT_2921: EX28DRAFT_2921 - 2-deoxy-D-gluconate 3-dehydrogenase, at 232,550 to 233,311 _2921 EX28DRAFT_2922: EX28DRAFT_2922 - 5-keto 4-deoxyuronate isomerase, at 233,375 to 234,211 _2922 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.731 kb on + strand, within EX28DRAFT_2920at 231.731 kb on + strand, within EX28DRAFT_2920at 231.732 kb on - strand, within EX28DRAFT_2920at 231.759 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.782 kb on + strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.783 kb on - strand, within EX28DRAFT_2920at 231.834 kb on - strand, within EX28DRAFT_2920at 231.969 kb on + strand, within EX28DRAFT_2920at 231.972 kb on - strand, within EX28DRAFT_2920at 232.092 kb on + strand, within EX28DRAFT_2920at 232.093 kb on - strand, within EX28DRAFT_2920at 232.225 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.227 kb on + strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.228 kb on - strandat 232.327 kb on - strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.536 kb on + strandat 232.599 kb on + strandat 232.599 kb on + strandat 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.742 kb on - strand, within EX28DRAFT_2921at 232.744 kb on - strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.774 kb on + strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.775 kb on - strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.839 kb on + strand, within EX28DRAFT_2921at 232.840 kb on - strand, within EX28DRAFT_2921at 232.885 kb on + strand, within EX28DRAFT_2921at 232.960 kb on + strand, within EX28DRAFT_2921at 232.961 kb on - strand, within EX28DRAFT_2921at 233.170 kb on + strand, within EX28DRAFT_2921at 233.191 kb on + strand, within EX28DRAFT_2921at 233.192 kb on - strand, within EX28DRAFT_2921at 233.322 kb on + strandat 233.323 kb on - strandat 233.323 kb on - strandat 233.356 kb on + strandat 233.357 kb on - strandat 233.446 kb on + strandat 233.447 kb on - strandat 233.447 kb on - strandat 233.833 kb on - strand, within EX28DRAFT_2922at 233.891 kb on - strand, within EX28DRAFT_2922at 233.926 kb on - strand, within EX28DRAFT_2922at 233.926 kb on - strand, within EX28DRAFT_2922at 234.062 kb on - strand, within EX28DRAFT_2922at 234.077 kb on - strand, within EX28DRAFT_2922at 234.108 kb on + strand, within EX28DRAFT_2922at 234.125 kb on + strand, within EX28DRAFT_2922at 234.163 kb on + strandat 234.286 kb on + strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.287 kb on - strandat 234.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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231,731 + EX28DRAFT_2920 0.64 +0.3
231,731 + EX28DRAFT_2920 0.64 -0.3
231,732 - EX28DRAFT_2920 0.64 -0.7
231,759 + EX28DRAFT_2920 0.66 -0.3
231,782 + EX28DRAFT_2920 0.68 -0.0
231,782 + EX28DRAFT_2920 0.68 +0.6
231,782 + EX28DRAFT_2920 0.68 +0.2
231,782 + EX28DRAFT_2920 0.68 -0.3
231,783 - EX28DRAFT_2920 0.68 +0.7
231,783 - EX28DRAFT_2920 0.68 +0.1
231,783 - EX28DRAFT_2920 0.68 +0.4
231,834 - EX28DRAFT_2920 0.72 +0.3
231,969 + EX28DRAFT_2920 0.81 -1.7
231,972 - EX28DRAFT_2920 0.81 +0.4
232,092 + EX28DRAFT_2920 0.90 +1.9
232,093 - EX28DRAFT_2920 0.90 -0.2
232,225 + +0.0
232,227 + +0.7
232,227 + -0.2
232,227 + +0.2
232,227 + +0.4
232,228 - -0.3
232,228 - -0.5
232,228 - +0.4
232,228 - +0.1
232,327 - +0.8
232,536 + -0.5
232,536 + +2.0
232,536 + -0.2
232,599 + -0.0
232,599 + +0.5
232,742 - EX28DRAFT_2921 0.25 -0.3
232,742 - EX28DRAFT_2921 0.25 +0.9
232,742 - EX28DRAFT_2921 0.25 -0.1
232,744 - EX28DRAFT_2921 0.25 +0.6
232,774 + EX28DRAFT_2921 0.29 +0.4
232,774 + EX28DRAFT_2921 0.29 -0.4
232,774 + EX28DRAFT_2921 0.29 +0.9
232,774 + EX28DRAFT_2921 0.29 +0.3
232,774 + EX28DRAFT_2921 0.29 +0.2
232,775 - EX28DRAFT_2921 0.30 +0.2
232,775 - EX28DRAFT_2921 0.30 +0.6
232,775 - EX28DRAFT_2921 0.30 +0.1
232,839 + EX28DRAFT_2921 0.38 -0.9
232,839 + EX28DRAFT_2921 0.38 +0.4
232,840 - EX28DRAFT_2921 0.38 -0.3
232,885 + EX28DRAFT_2921 0.44 -1.2
232,960 + EX28DRAFT_2921 0.54 +0.3
232,961 - EX28DRAFT_2921 0.54 -0.3
233,170 + EX28DRAFT_2921 0.81 -0.2
233,191 + EX28DRAFT_2921 0.84 -0.2
233,192 - EX28DRAFT_2921 0.84 +0.5
233,322 + -0.8
233,323 - +0.8
233,323 - +1.0
233,356 + +0.9
233,357 - +0.5
233,446 + +0.2
233,447 - -0.0
233,447 - +0.2
233,833 - EX28DRAFT_2922 0.55 -0.2
233,891 - EX28DRAFT_2922 0.62 +0.6
233,926 - EX28DRAFT_2922 0.66 -0.2
233,926 - EX28DRAFT_2922 0.66 +0.3
234,062 - EX28DRAFT_2922 0.82 -0.2
234,077 - EX28DRAFT_2922 0.84 +0.5
234,108 + EX28DRAFT_2922 0.88 -0.9
234,125 + EX28DRAFT_2922 0.90 -0.4
234,163 + +0.1
234,286 + +0.2
234,287 - +0.7
234,287 - -0.1
234,287 - -0.3
234,287 - -0.7
234,287 - -3.3
234,298 - -0.9

Or see this region's nucleotide sequence