Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2862 and EX28DRAFT_2863 are separated by 223 nucleotides EX28DRAFT_2863 and EX28DRAFT_2864 are separated by 67 nucleotides
EX28DRAFT_2862: EX28DRAFT_2862 - CTP synthase (EC 6.3.4.2), at 164,115 to 165,752
_2862
EX28DRAFT_2863: EX28DRAFT_2863 - MazG family protein, at 165,976 to 166,767
_2863
EX28DRAFT_2864: EX28DRAFT_2864 - (p)ppGpp synthetase, RelA/SpoT family, at 166,835 to 169,066
_2864
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 165.874 kb on - strand at 165.902 kb on + strand at 166.330 kb on - strand, within EX28DRAFT_2863 at 166.365 kb on + strand, within EX28DRAFT_2863 at 166.530 kb on + strand, within EX28DRAFT_2863 at 166.562 kb on + strand, within EX28DRAFT_2863 at 166.563 kb on - strand, within EX28DRAFT_2863 at 166.646 kb on + strand, within EX28DRAFT_2863 at 166.663 kb on - strand, within EX28DRAFT_2863 at 166.663 kb on - strand, within EX28DRAFT_2863 at 166.920 kb on + strand at 166.936 kb on + strand at 166.937 kb on - strand at 166.937 kb on - strand at 167.111 kb on + strand, within EX28DRAFT_2864 at 167.111 kb on + strand, within EX28DRAFT_2864 at 167.111 kb on + strand, within EX28DRAFT_2864 at 167.111 kb on + strand, within EX28DRAFT_2864 at 167.197 kb on + strand, within EX28DRAFT_2864 at 167.198 kb on - strand, within EX28DRAFT_2864 at 167.317 kb on - strand, within EX28DRAFT_2864
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 165,874 - +0.7 165,902 + -0.3 166,330 - EX28DRAFT_2863 0.45 +0.8 166,365 + EX28DRAFT_2863 0.49 -0.3 166,530 + EX28DRAFT_2863 0.70 -0.3 166,562 + EX28DRAFT_2863 0.74 -0.0 166,563 - EX28DRAFT_2863 0.74 -0.1 166,646 + EX28DRAFT_2863 0.85 +1.6 166,663 - EX28DRAFT_2863 0.87 +0.6 166,663 - EX28DRAFT_2863 0.87 +0.8 166,920 + -0.5 166,936 + -1.4 166,937 - -0.5 166,937 - -1.1 167,111 + EX28DRAFT_2864 0.12 +0.5 167,111 + EX28DRAFT_2864 0.12 -1.1 167,111 + EX28DRAFT_2864 0.12 +0.3 167,111 + EX28DRAFT_2864 0.12 -0.9 167,197 + EX28DRAFT_2864 0.16 -0.9 167,198 - EX28DRAFT_2864 0.16 -1.4 167,317 - EX28DRAFT_2864 0.22 -3.3
Or see this region's nucleotide sequence