Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2832

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2831 and EX28DRAFT_2832 overlap by 11 nucleotidesEX28DRAFT_2832 and EX28DRAFT_2833 are separated by 171 nucleotidesEX28DRAFT_2833 and EX28DRAFT_2834 overlap by 4 nucleotides EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974 _2831 EX28DRAFT_2832: EX28DRAFT_2832 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 135,964 to 136,566 _2832 EX28DRAFT_2833: EX28DRAFT_2833 - Transcriptional regulators, at 136,738 to 137,145 _2833 EX28DRAFT_2834: EX28DRAFT_2834 - Transcriptional regulator, at 137,142 to 138,032 _2834 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1at 134.988 kb on - strand, within EX28DRAFT_2831at 135.031 kb on + strand, within EX28DRAFT_2831at 135.062 kb on - strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831at 135.139 kb on + strand, within EX28DRAFT_2831at 135.313 kb on + strand, within EX28DRAFT_2831at 135.314 kb on - strand, within EX28DRAFT_2831at 135.366 kb on - strand, within EX28DRAFT_2831at 135.481 kb on + strand, within EX28DRAFT_2831at 135.482 kb on - strand, within EX28DRAFT_2831at 135.633 kb on - strand, within EX28DRAFT_2831at 135.978 kb on + strandat 135.978 kb on + strandat 135.979 kb on - strandat 135.979 kb on - strandat 136.112 kb on + strand, within EX28DRAFT_2832at 136.113 kb on - strand, within EX28DRAFT_2832at 136.113 kb on - strand, within EX28DRAFT_2832at 136.115 kb on + strand, within EX28DRAFT_2832at 136.116 kb on - strand, within EX28DRAFT_2832at 136.356 kb on + strand, within EX28DRAFT_2832at 136.556 kb on - strandat 136.607 kb on + strandat 136.607 kb on + strandat 136.607 kb on + strandat 136.608 kb on - strandat 136.608 kb on - strandat 136.608 kb on - strandat 136.612 kb on + strandat 136.908 kb on + strand, within EX28DRAFT_2833at 137.144 kb on - strandat 137.144 kb on - strandat 137.144 kb on - strandat 137.144 kb on - strandat 137.221 kb on + strandat 137.221 kb on + strandat 137.243 kb on + strand, within EX28DRAFT_2834at 137.244 kb on - strand, within EX28DRAFT_2834at 137.245 kb on + strand, within EX28DRAFT_2834at 137.245 kb on + strand, within EX28DRAFT_2834at 137.245 kb on + strand, within EX28DRAFT_2834at 137.246 kb on - strand, within EX28DRAFT_2834at 137.463 kb on - strand, within EX28DRAFT_2834

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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134,988 - EX28DRAFT_2831 0.31 -0.5
135,031 + EX28DRAFT_2831 0.34 -0.3
135,062 - EX28DRAFT_2831 0.36 +0.7
135,139 + EX28DRAFT_2831 0.41 -0.1
135,139 + EX28DRAFT_2831 0.41 +0.5
135,313 + EX28DRAFT_2831 0.54 -0.7
135,314 - EX28DRAFT_2831 0.54 -1.0
135,366 - EX28DRAFT_2831 0.57 -1.1
135,481 + EX28DRAFT_2831 0.65 -0.0
135,482 - EX28DRAFT_2831 0.65 -0.6
135,633 - EX28DRAFT_2831 0.76 -1.2
135,978 + -0.8
135,978 + -1.2
135,979 - -3.1
135,979 - +0.5
136,112 + EX28DRAFT_2832 0.25 -0.7
136,113 - EX28DRAFT_2832 0.25 -0.2
136,113 - EX28DRAFT_2832 0.25 +0.1
136,115 + EX28DRAFT_2832 0.25 -0.2
136,116 - EX28DRAFT_2832 0.25 +0.0
136,356 + EX28DRAFT_2832 0.65 -1.9
136,556 - +0.1
136,607 + +0.9
136,607 + -0.3
136,607 + +0.8
136,608 - -0.3
136,608 - -0.7
136,608 - +0.0
136,612 + -2.2
136,908 + EX28DRAFT_2833 0.42 -3.7
137,144 - -0.2
137,144 - -0.5
137,144 - +0.9
137,144 - -0.2
137,221 + +1.0
137,221 + +0.5
137,243 + EX28DRAFT_2834 0.11 +0.3
137,244 - EX28DRAFT_2834 0.11 -0.2
137,245 + EX28DRAFT_2834 0.12 -0.4
137,245 + EX28DRAFT_2834 0.12 -0.6
137,245 + EX28DRAFT_2834 0.12 +0.3
137,246 - EX28DRAFT_2834 0.12 +0.3
137,463 - EX28DRAFT_2834 0.36 +0.6

Or see this region's nucleotide sequence