Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2791

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2790 and EX28DRAFT_2791 are separated by 252 nucleotidesEX28DRAFT_2791 and EX28DRAFT_2792 overlap by 4 nucleotidesEX28DRAFT_2792 and EX28DRAFT_2793 are separated by 12 nucleotides EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798 _2790 EX28DRAFT_2791: EX28DRAFT_2791 - PTS system, glucitol/sorbitol-specific, IIC component, at 95,051 to 95,614 _2791 EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570 _2792 EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945 _2793 Position (kb) 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.076 kb on - strand, within EX28DRAFT_2790at 94.105 kb on - strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.112 kb on - strand, within EX28DRAFT_2790at 94.113 kb on + strand, within EX28DRAFT_2790at 94.233 kb on + strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.251 kb on + strand, within EX28DRAFT_2790at 94.252 kb on - strand, within EX28DRAFT_2790at 94.255 kb on + strand, within EX28DRAFT_2790at 94.441 kb on + strand, within EX28DRAFT_2790at 94.442 kb on - strand, within EX28DRAFT_2790at 94.442 kb on - strand, within EX28DRAFT_2790at 94.660 kb on + strand, within EX28DRAFT_2790at 94.660 kb on + strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.661 kb on - strand, within EX28DRAFT_2790at 94.738 kb on + strandat 94.739 kb on - strandat 94.741 kb on + strandat 94.741 kb on + strandat 94.742 kb on - strandat 94.833 kb on - strandat 94.835 kb on - strandat 94.835 kb on - strandat 95.334 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.346 kb on - strand, within EX28DRAFT_2791at 95.363 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.486 kb on + strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.487 kb on - strand, within EX28DRAFT_2791at 95.696 kb on - strandat 95.696 kb on - strandat 95.845 kb on - strand, within EX28DRAFT_2792at 95.845 kb on - strand, within EX28DRAFT_2792at 95.878 kb on - strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.932 kb on + strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 95.933 kb on - strand, within EX28DRAFT_2792at 96.011 kb on - strand, within EX28DRAFT_2792at 96.150 kb on + strand, within EX28DRAFT_2792at 96.406 kb on - strand, within EX28DRAFT_2792at 96.558 kb on + strandat 96.568 kb on + strandat 96.595 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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94,076 - EX28DRAFT_2790 0.34 -0.0
94,105 - EX28DRAFT_2790 0.37 +0.3
94,111 + EX28DRAFT_2790 0.38 +0.3
94,111 + EX28DRAFT_2790 0.38 +0.3
94,112 - EX28DRAFT_2790 0.38 +0.1
94,113 + EX28DRAFT_2790 0.38 -0.3
94,233 + EX28DRAFT_2790 0.49 +0.5
94,234 - EX28DRAFT_2790 0.49 +1.6
94,234 - EX28DRAFT_2790 0.49 -0.2
94,234 - EX28DRAFT_2790 0.49 -0.0
94,251 + EX28DRAFT_2790 0.50 -0.2
94,252 - EX28DRAFT_2790 0.50 +0.3
94,255 + EX28DRAFT_2790 0.51 +0.0
94,441 + EX28DRAFT_2790 0.67 +1.5
94,442 - EX28DRAFT_2790 0.68 -2.1
94,442 - EX28DRAFT_2790 0.68 -3.2
94,660 + EX28DRAFT_2790 0.87 -1.9
94,660 + EX28DRAFT_2790 0.87 +0.1
94,661 - EX28DRAFT_2790 0.87 +0.5
94,661 - EX28DRAFT_2790 0.87 +0.1
94,738 + -0.3
94,739 - -0.1
94,741 + -0.3
94,741 + -0.5
94,742 - -0.3
94,833 - +0.3
94,835 - +2.0
94,835 - +0.5
95,334 - EX28DRAFT_2791 0.50 -0.3
95,346 - EX28DRAFT_2791 0.52 -0.6
95,346 - EX28DRAFT_2791 0.52 -0.4
95,363 + EX28DRAFT_2791 0.55 -1.1
95,486 + EX28DRAFT_2791 0.77 +0.2
95,486 + EX28DRAFT_2791 0.77 +0.2
95,487 - EX28DRAFT_2791 0.77 -0.2
95,487 - EX28DRAFT_2791 0.77 +0.1
95,487 - EX28DRAFT_2791 0.77 -0.9
95,696 - -1.0
95,696 - +1.2
95,845 - EX28DRAFT_2792 0.24 -1.3
95,845 - EX28DRAFT_2792 0.24 -1.5
95,878 - EX28DRAFT_2792 0.28 -0.4
95,932 + EX28DRAFT_2792 0.33 +0.2
95,932 + EX28DRAFT_2792 0.33 +1.1
95,932 + EX28DRAFT_2792 0.33 +0.5
95,933 - EX28DRAFT_2792 0.34 -0.5
95,933 - EX28DRAFT_2792 0.34 +0.7
95,933 - EX28DRAFT_2792 0.34 +2.0
96,011 - EX28DRAFT_2792 0.42 +0.1
96,150 + EX28DRAFT_2792 0.56 -0.1
96,406 - EX28DRAFT_2792 0.83 -0.6
96,558 + +0.2
96,568 + +0.1
96,595 + +1.1

Or see this region's nucleotide sequence