Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2751

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2750 and EX28DRAFT_2751 overlap by 4 nucleotidesEX28DRAFT_2751 and EX28DRAFT_2752 are separated by 179 nucleotidesEX28DRAFT_2752 and EX28DRAFT_2753 are separated by 9 nucleotides EX28DRAFT_2750: EX28DRAFT_2750 - Transcriptional regulator, at 61,315 to 62,244 _2750 EX28DRAFT_2751: EX28DRAFT_2751 - Uncharacterized homolog of Blt101, at 62,241 to 62,399 _2751 EX28DRAFT_2752: EX28DRAFT_2752 - Predicted transcriptional regulators, at 62,579 to 62,878 _2752 EX28DRAFT_2753: EX28DRAFT_2753 - Rhodanese-related sulfurtransferase, at 62,888 to 63,409 _2753 Position (kb) 62 63Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 61.281 kb on + strandat 61.282 kb on - strandat 61.314 kb on + strandat 61.520 kb on - strand, within EX28DRAFT_2750at 61.576 kb on - strand, within EX28DRAFT_2750at 61.615 kb on - strand, within EX28DRAFT_2750at 61.631 kb on - strand, within EX28DRAFT_2750at 61.715 kb on - strand, within EX28DRAFT_2750at 62.053 kb on + strand, within EX28DRAFT_2750at 62.054 kb on - strand, within EX28DRAFT_2750at 62.054 kb on - strand, within EX28DRAFT_2750at 62.054 kb on - strand, within EX28DRAFT_2750at 62.218 kb on + strandat 62.218 kb on + strandat 62.218 kb on + strandat 62.218 kb on + strandat 62.218 kb on + strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.219 kb on - strandat 62.220 kb on + strandat 62.228 kb on + strandat 62.229 kb on - strandat 62.287 kb on + strand, within EX28DRAFT_2751at 62.315 kb on + strand, within EX28DRAFT_2751at 62.316 kb on - strand, within EX28DRAFT_2751at 62.319 kb on - strand, within EX28DRAFT_2751at 62.402 kb on - strandat 62.434 kb on - strandat 62.450 kb on + strandat 62.508 kb on - strandat 62.527 kb on - strandat 62.576 kb on - strandat 62.728 kb on - strand, within EX28DRAFT_2752at 62.814 kb on - strand, within EX28DRAFT_2752at 62.835 kb on + strand, within EX28DRAFT_2752at 62.868 kb on - strandat 63.037 kb on + strand, within EX28DRAFT_2753at 63.278 kb on + strand, within EX28DRAFT_2753

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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61,281 + +0.3
61,282 - +0.1
61,314 + +0.0
61,520 - EX28DRAFT_2750 0.22 -1.0
61,576 - EX28DRAFT_2750 0.28 +0.1
61,615 - EX28DRAFT_2750 0.32 -0.1
61,631 - EX28DRAFT_2750 0.34 -0.2
61,715 - EX28DRAFT_2750 0.43 +0.7
62,053 + EX28DRAFT_2750 0.79 -0.1
62,054 - EX28DRAFT_2750 0.79 -0.9
62,054 - EX28DRAFT_2750 0.79 +1.0
62,054 - EX28DRAFT_2750 0.79 +0.5
62,218 + +0.1
62,218 + +0.2
62,218 + -1.1
62,218 + +0.7
62,218 + -0.1
62,219 - +0.2
62,219 - -0.2
62,219 - +0.2
62,219 - -0.5
62,219 - +1.2
62,219 - +0.5
62,219 - +0.5
62,219 - -0.1
62,219 - -0.9
62,220 + +0.8
62,228 + -2.4
62,229 - +0.6
62,287 + EX28DRAFT_2751 0.29 -0.9
62,315 + EX28DRAFT_2751 0.47 -1.1
62,316 - EX28DRAFT_2751 0.47 -0.5
62,319 - EX28DRAFT_2751 0.49 -0.8
62,402 - -0.2
62,434 - +0.5
62,450 + -0.4
62,508 - -0.7
62,527 - +0.2
62,576 - +0.1
62,728 - EX28DRAFT_2752 0.50 -0.7
62,814 - EX28DRAFT_2752 0.78 -4.0
62,835 + EX28DRAFT_2752 0.85 +0.6
62,868 - +0.2
63,037 + EX28DRAFT_2753 0.29 -1.7
63,278 + EX28DRAFT_2753 0.75 +0.1

Or see this region's nucleotide sequence