Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2004

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
2,006,199	-		EX28DRAFT_2002	0.79	+0.3
2,006,199	-		EX28DRAFT_2002	0.79	+0.3
2,006,266	+		EX28DRAFT_2002	0.87	+0.1
2,006,267	-		EX28DRAFT_2002	0.87	-0.5
2,006,341	+				-0.9
2,006,341	+				-0.4
2,006,341	+				-0.2
2,006,341	+				-0.6
2,006,370	-				+0.0
2,006,370	-				-0.1
2,006,462	+		EX28DRAFT_2003	0.13	-2.1
2,006,678	+		EX28DRAFT_2003	0.41	+0.4
2,006,980	+		EX28DRAFT_2003	0.80	-2.2
2,006,995	+		EX28DRAFT_2003	0.82	-0.9
2,007,109	+				-0.5
2,007,119	+				+0.1
2,007,119	+				-0.4
2,007,119	+				+0.6
2,007,120	-				+0.1
2,007,120	-				-0.3
2,007,175	+				-0.4
2,007,176	-				+0.0
2,007,185	-				-3.3
2,007,752	+		EX28DRAFT_2004	0.22	-0.4
2,007,753	-		EX28DRAFT_2004	0.22	+0.7
2,007,770	+		EX28DRAFT_2004	0.22	-0.0
2,007,819	-		EX28DRAFT_2004	0.24	+0.3
2,007,820	+		EX28DRAFT_2004	0.24	+0.5
2,007,821	-		EX28DRAFT_2004	0.24	+2.2
2,007,821	-		EX28DRAFT_2004	0.24	+0.4
2,008,059	+		EX28DRAFT_2004	0.33	-0.3
2,008,060	-		EX28DRAFT_2004	0.33	-0.6
2,008,168	+		EX28DRAFT_2004	0.38	-2.4
2,008,226	-		EX28DRAFT_2004	0.40	-0.5
2,008,241	+		EX28DRAFT_2004	0.40	+2.8
2,008,242	-		EX28DRAFT_2004	0.40	-0.3
2,008,331	-		EX28DRAFT_2004	0.44	-1.0
2,008,363	+		EX28DRAFT_2004	0.45	-0.7
2,008,416	-		EX28DRAFT_2004	0.47	-0.9
2,008,416	-		EX28DRAFT_2004	0.47	+1.7
2,008,416	-		EX28DRAFT_2004	0.47	-0.4
2,008,416	-		EX28DRAFT_2004	0.47	+0.0
2,008,417	+		EX28DRAFT_2004	0.47	-0.3
2,008,418	-		EX28DRAFT_2004	0.47	-0.1
2,008,438	+		EX28DRAFT_2004	0.48	-0.0
2,008,481	-		EX28DRAFT_2004	0.50	+0.0
2,008,511	+		EX28DRAFT_2004	0.51	-0.6
2,008,580	-		EX28DRAFT_2004	0.53	+0.2
2,008,580	-		EX28DRAFT_2004	0.53	-0.1
2,008,936	+		EX28DRAFT_2004	0.67	-0.8
2,008,937	-		EX28DRAFT_2004	0.67	+2.5
2,008,943	+		EX28DRAFT_2004	0.67	-0.3
2,008,976	-		EX28DRAFT_2004	0.69	-0.5
2,008,976	-		EX28DRAFT_2004	0.69	+0.2
2,008,994	+		EX28DRAFT_2004	0.69	-0.7
2,009,003	+		EX28DRAFT_2004	0.70	-0.4
2,009,048	+		EX28DRAFT_2004	0.71	-0.1
2,009,049	-		EX28DRAFT_2004	0.71	+1.1
2,009,049	-		EX28DRAFT_2004	0.71	-0.3
2,009,049	-		EX28DRAFT_2004	0.71	-2.0
2,009,050	+		EX28DRAFT_2004	0.71	-1.3
2,009,050	+		EX28DRAFT_2004	0.71	+0.1
2,009,050	+		EX28DRAFT_2004	0.71	+0.3
2,009,050	+		EX28DRAFT_2004	0.71	-0.4
2,009,051	-		EX28DRAFT_2004	0.71	-1.4
2,009,051	-		EX28DRAFT_2004	0.71	-0.4
2,009,051	-		EX28DRAFT_2004	0.71	+0.3
2,009,051	-		EX28DRAFT_2004	0.71	+1.6
2,009,051	-		EX28DRAFT_2004	0.71	-2.4
2,009,066	-		EX28DRAFT_2004	0.72	-1.2
2,009,066	-		EX28DRAFT_2004	0.72	-0.1
2,009,066	-		EX28DRAFT_2004	0.72	-0.5
2,009,345	-		EX28DRAFT_2004	0.83	-0.8
2,009,354	+		EX28DRAFT_2004	0.83	-0.8
2,009,415	+		EX28DRAFT_2004	0.85	-0.1
2,009,415	+		EX28DRAFT_2004	0.85	-0.8
2,009,415	+		EX28DRAFT_2004	0.85	+1.1
2,009,416	-		EX28DRAFT_2004	0.85	-1.4
2,009,416	-		EX28DRAFT_2004	0.85	-1.0
2,009,416	-		EX28DRAFT_2004	0.85	+0.1
2,009,416	-		EX28DRAFT_2004	0.85	-1.0
2,009,416	-		EX28DRAFT_2004	0.85	+0.1
2,009,416	-		EX28DRAFT_2004	0.85	+1.3
2,009,417	+		EX28DRAFT_2004	0.85	-0.1
2,009,417	+		EX28DRAFT_2004	0.85	-0.9
2,009,528	+		EX28DRAFT_2004	0.90	+0.2
2,009,577	-				-0.2
2,009,578	+				-0.5
2,009,578	+				-2.9
2,009,579	-				+0.6
2,009,600	+				+0.0
2,009,601	-				+0.1
2,009,601	-				+3.0
2,009,703	-				+0.2
2,009,774	-				+1.4
2,009,798	+				-0.9
2,009,798	+				+0.7
2,009,837	+				+0.2
2,009,837	+				+0.6
2,009,838	-				+0.1
2,009,838	-				+0.6
2,009,840	-				+0.3
2,009,840	-				+0.3
2,009,905	+				-0.2
2,009,913	+				+0.1
2,009,913	+				+0.2
2,009,916	-				+0.6
2,009,945	-				+0.8
2,009,945	-				+0.1
2,009,955	+				+0.2
2,009,956	-				+0.2
2,009,956	-				-0.3
2,009,956	-				+0.6
2,009,956	-				-0.5
2,009,976	+				-0.8
2,009,976	+				-0.7
2,009,976	+				+0.4
2,009,977	-				+1.0
2,009,977	-				+0.4
2,009,977	-				+0.2
2,009,977	-				+1.3
2,009,977	-				+0.4
2,009,977	-				+0.7
2,009,984	+				-1.2
2,009,985	-				+0.1
2,009,985	-				+0.8
2,009,985	-				-0.1
2,009,994	-				+0.6
2,009,994	-				+0.5
2,009,994	-				+1.9
2,009,994	-				-1.1
2,009,994	-				+0.1
2,009,995	+				+0.9
2,009,996	-				+0.6
2,009,996	-				-0.5
2,009,996	-				+0.4
2,009,996	-				+0.0
2,010,010	+				+0.5
2,010,041	+				-0.9
2,010,041	+				+0.4
2,010,041	+				-0.5
2,010,042	-				-0.1
2,010,042	-				+0.5
2,010,042	-				+0.4
2,010,042	-				+0.2
2,010,052	+				-0.9
2,010,052	+				+0.1
2,010,052	+				-0.4
2,010,052	+				+0.3
2,010,052	+				+0.3
2,010,053	-				+0.1
2,010,053	-				+2.1
2,010,053	-				-0.6
2,010,053	-				-1.0
2,010,053	-				+0.7
2,010,053	-				-0.2
2,010,053	-				-0.4
2,010,082	+				+0.0
2,010,082	+				-0.4
2,010,083	-				+0.2
2,010,083	-				-1.6
2,010,083	-				+0.2
2,010,106	+				-0.1
2,010,107	-				-1.2
2,010,115	+				+2.8
2,010,115	+				-0.8
2,010,116	-				-0.6
2,010,140	+				+0.5
2,010,140	+				+0.9
2,010,141	-				+0.2
2,010,141	-				+0.4
2,010,141	-				-0.1
2,010,141	-				+0.2
2,010,143	+				+0.3
2,010,143	+				+1.5
2,010,143	+				+2.0
2,010,143	+				-0.0
2,010,143	+				-0.2
2,010,143	+				+0.0
2,010,144	-				-2.1
2,010,144	-				+0.9
2,010,144	-				+1.5
2,010,200	+		EX28DRAFT_2005	0.12	+0.9
2,010,201	-		EX28DRAFT_2005	0.12	-0.6
2,010,232	+		EX28DRAFT_2005	0.15	+0.4
2,010,232	+		EX28DRAFT_2005	0.15	+0.1
2,010,233	-		EX28DRAFT_2005	0.15	-0.1
2,010,233	-		EX28DRAFT_2005	0.15	+2.5
2,010,264	-		EX28DRAFT_2005	0.18	-0.7
2,010,331	+		EX28DRAFT_2005	0.23	+0.6
2,010,509	-		EX28DRAFT_2005	0.38	-0.3
2,010,662	+		EX28DRAFT_2005	0.51	+0.2
2,010,662	+		EX28DRAFT_2005	0.51	+1.2
2,010,663	-		EX28DRAFT_2005	0.51	+0.0
2,010,663	-		EX28DRAFT_2005	0.51	-4.0
2,010,787	-		EX28DRAFT_2005	0.61	-0.7