Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1735

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1734 and EX28DRAFT_1735 are separated by 48 nucleotidesEX28DRAFT_1735 and EX28DRAFT_1736 are separated by 50 nucleotides EX28DRAFT_1734: EX28DRAFT_1734 - Predicted Na+/dicarboxylate symporter, at 1,748,377 to 1,749,768 _1734 EX28DRAFT_1735: EX28DRAFT_1735 - Cell division activator CedA, at 1,749,817 to 1,750,209 _1735 EX28DRAFT_1736: EX28DRAFT_1736 - Catalase, at 1,750,260 to 1,752,509 _1736 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.836 kb on + strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1748.837 kb on - strand, within EX28DRAFT_1734at 1749.195 kb on + strand, within EX28DRAFT_1734at 1749.195 kb on + strand, within EX28DRAFT_1734at 1749.196 kb on - strand, within EX28DRAFT_1734at 1749.819 kb on - strandat 1749.933 kb on - strand, within EX28DRAFT_1735at 1749.933 kb on - strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.016 kb on + strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.017 kb on - strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.020 kb on + strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.021 kb on - strand, within EX28DRAFT_1735at 1750.023 kb on + strand, within EX28DRAFT_1735at 1750.102 kb on - strand, within EX28DRAFT_1735at 1750.197 kb on + strandat 1750.197 kb on + strandat 1750.198 kb on - strandat 1750.215 kb on + strandat 1750.216 kb on - strandat 1750.222 kb on - strandat 1750.224 kb on + strandat 1750.394 kb on + strandat 1750.394 kb on + strandat 1750.668 kb on + strand, within EX28DRAFT_1736at 1750.754 kb on - strand, within EX28DRAFT_1736at 1750.778 kb on + strand, within EX28DRAFT_1736at 1750.830 kb on - strand, within EX28DRAFT_1736at 1750.934 kb on - strand, within EX28DRAFT_1736at 1750.971 kb on + strand, within EX28DRAFT_1736at 1750.971 kb on + strand, within EX28DRAFT_1736at 1750.972 kb on - strand, within EX28DRAFT_1736at 1750.997 kb on - strand, within EX28DRAFT_1736

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,748,836 + EX28DRAFT_1734 0.33 -1.0
1,748,836 + EX28DRAFT_1734 0.33 +0.1
1,748,836 + EX28DRAFT_1734 0.33 +0.2
1,748,836 + EX28DRAFT_1734 0.33 -0.2
1,748,836 + EX28DRAFT_1734 0.33 +0.9
1,748,837 - EX28DRAFT_1734 0.33 -0.4
1,748,837 - EX28DRAFT_1734 0.33 +0.2
1,748,837 - EX28DRAFT_1734 0.33 -0.4
1,748,837 - EX28DRAFT_1734 0.33 +0.4
1,748,837 - EX28DRAFT_1734 0.33 +2.1
1,749,195 + EX28DRAFT_1734 0.59 -0.7
1,749,195 + EX28DRAFT_1734 0.59 -2.5
1,749,196 - EX28DRAFT_1734 0.59 -0.5
1,749,819 - -0.1
1,749,933 - EX28DRAFT_1735 0.30 +0.1
1,749,933 - EX28DRAFT_1735 0.30 +0.6
1,750,016 + EX28DRAFT_1735 0.51 +2.1
1,750,016 + EX28DRAFT_1735 0.51 -0.1
1,750,016 + EX28DRAFT_1735 0.51 +0.3
1,750,016 + EX28DRAFT_1735 0.51 -0.3
1,750,016 + EX28DRAFT_1735 0.51 -1.1
1,750,016 + EX28DRAFT_1735 0.51 -1.3
1,750,016 + EX28DRAFT_1735 0.51 +0.6
1,750,017 - EX28DRAFT_1735 0.51 -1.0
1,750,017 - EX28DRAFT_1735 0.51 -0.9
1,750,017 - EX28DRAFT_1735 0.51 +0.1
1,750,017 - EX28DRAFT_1735 0.51 -1.1
1,750,017 - EX28DRAFT_1735 0.51 +2.4
1,750,017 - EX28DRAFT_1735 0.51 -0.7
1,750,020 + EX28DRAFT_1735 0.52 -0.1
1,750,020 + EX28DRAFT_1735 0.52 -1.0
1,750,021 - EX28DRAFT_1735 0.52 +0.0
1,750,021 - EX28DRAFT_1735 0.52 -0.1
1,750,021 - EX28DRAFT_1735 0.52 +0.2
1,750,021 - EX28DRAFT_1735 0.52 +0.0
1,750,021 - EX28DRAFT_1735 0.52 -0.1
1,750,021 - EX28DRAFT_1735 0.52 -0.6
1,750,023 + EX28DRAFT_1735 0.52 -0.2
1,750,102 - EX28DRAFT_1735 0.73 -1.4
1,750,197 + +0.1
1,750,197 + -0.5
1,750,198 - +1.3
1,750,215 + +0.5
1,750,216 - +0.2
1,750,222 - +0.1
1,750,224 + -0.0
1,750,394 + +0.5
1,750,394 + +0.7
1,750,668 + EX28DRAFT_1736 0.18 +1.7
1,750,754 - EX28DRAFT_1736 0.22 -0.4
1,750,778 + EX28DRAFT_1736 0.23 +0.8
1,750,830 - EX28DRAFT_1736 0.25 +0.8
1,750,934 - EX28DRAFT_1736 0.30 +0.4
1,750,971 + EX28DRAFT_1736 0.32 +0.4
1,750,971 + EX28DRAFT_1736 0.32 +1.4
1,750,972 - EX28DRAFT_1736 0.32 +1.1
1,750,997 - EX28DRAFT_1736 0.33 -2.3

Or see this region's nucleotide sequence