Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1480

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotidesEX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotidesEX28DRAFT_1480 and EX28DRAFT_1481 are separated by 14 nucleotidesEX28DRAFT_1481 and EX28DRAFT_1482 are separated by 170 nucleotides EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933 _1478 EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767 _1479 EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467 _1480 EX28DRAFT_1481: EX28DRAFT_1481 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,495,482 to 1,496,111 _1481 EX28DRAFT_1482: EX28DRAFT_1482 - Transcriptional regulator, at 1,496,282 to 1,497,166 _1482 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1493.907 kb on - strandat 1493.909 kb on + strandat 1493.910 kb on - strandat 1493.931 kb on + strandat 1494.014 kb on - strandat 1494.306 kb on + strand, within EX28DRAFT_1479at 1494.499 kb on - strand, within EX28DRAFT_1479at 1494.499 kb on - strand, within EX28DRAFT_1479at 1494.500 kb on + strand, within EX28DRAFT_1479at 1494.505 kb on - strand, within EX28DRAFT_1479at 1494.694 kb on + strand, within EX28DRAFT_1479at 1494.815 kb on + strandat 1495.060 kb on + strand, within EX28DRAFT_1480at 1495.106 kb on + strand, within EX28DRAFT_1480at 1495.123 kb on - strand, within EX28DRAFT_1480at 1495.198 kb on + strand, within EX28DRAFT_1480at 1495.248 kb on + strand, within EX28DRAFT_1480at 1495.345 kb on - strand, within EX28DRAFT_1480at 1495.356 kb on + strand, within EX28DRAFT_1480at 1495.448 kb on + strandat 1495.449 kb on - strandat 1495.452 kb on + strandat 1495.455 kb on + strandat 1495.461 kb on + strandat 1495.467 kb on + strandat 1495.622 kb on - strand, within EX28DRAFT_1481at 1495.622 kb on - strand, within EX28DRAFT_1481at 1495.698 kb on - strand, within EX28DRAFT_1481at 1495.701 kb on + strand, within EX28DRAFT_1481at 1495.727 kb on - strand, within EX28DRAFT_1481at 1495.816 kb on + strand, within EX28DRAFT_1481at 1495.817 kb on - strand, within EX28DRAFT_1481at 1495.884 kb on + strand, within EX28DRAFT_1481at 1495.885 kb on - strand, within EX28DRAFT_1481at 1495.914 kb on + strand, within EX28DRAFT_1481at 1496.085 kb on + strandat 1496.122 kb on - strandat 1496.139 kb on + strandat 1496.260 kb on - strandat 1496.349 kb on + strandat 1496.349 kb on + strandat 1496.439 kb on + strand, within EX28DRAFT_1482

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,493,907 - +0.1
1,493,909 + -1.2
1,493,910 - -0.2
1,493,931 + +2.7
1,494,014 - -0.3
1,494,306 + EX28DRAFT_1479 0.26 +1.2
1,494,499 - EX28DRAFT_1479 0.57 -3.1
1,494,499 - EX28DRAFT_1479 0.57 -2.2
1,494,500 + EX28DRAFT_1479 0.57 -2.7
1,494,505 - EX28DRAFT_1479 0.58 -0.3
1,494,694 + EX28DRAFT_1479 0.88 -0.0
1,494,815 + +0.3
1,495,060 + EX28DRAFT_1480 0.33 -1.0
1,495,106 + EX28DRAFT_1480 0.41 -1.5
1,495,123 - EX28DRAFT_1480 0.44 -2.8
1,495,198 + EX28DRAFT_1480 0.56 -0.2
1,495,248 + EX28DRAFT_1480 0.64 -0.9
1,495,345 - EX28DRAFT_1480 0.80 +1.1
1,495,356 + EX28DRAFT_1480 0.82 -2.1
1,495,448 + -1.4
1,495,449 - +0.2
1,495,452 + -1.2
1,495,455 + -0.4
1,495,461 + +2.2
1,495,467 + -0.1
1,495,622 - EX28DRAFT_1481 0.22 -0.5
1,495,622 - EX28DRAFT_1481 0.22 +0.8
1,495,698 - EX28DRAFT_1481 0.34 -0.7
1,495,701 + EX28DRAFT_1481 0.35 -2.5
1,495,727 - EX28DRAFT_1481 0.39 -1.7
1,495,816 + EX28DRAFT_1481 0.53 +0.1
1,495,817 - EX28DRAFT_1481 0.53 -0.4
1,495,884 + EX28DRAFT_1481 0.64 +0.9
1,495,885 - EX28DRAFT_1481 0.64 +0.7
1,495,914 + EX28DRAFT_1481 0.69 +0.8
1,496,085 + -0.7
1,496,122 - -0.4
1,496,139 + +0.4
1,496,260 - -3.1
1,496,349 + +0.2
1,496,349 + +0.1
1,496,439 + EX28DRAFT_1482 0.18 -0.7

Or see this region's nucleotide sequence