Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1460

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1457 and EX28DRAFT_1458 are separated by 109 nucleotidesEX28DRAFT_1458 and EX28DRAFT_1459 are separated by 151 nucleotidesEX28DRAFT_1459 and EX28DRAFT_1460 overlap by 1 nucleotidesEX28DRAFT_1460 and EX28DRAFT_1461 are separated by 17 nucleotidesEX28DRAFT_1461 and EX28DRAFT_1462 are separated by 104 nucleotides EX28DRAFT_1457: EX28DRAFT_1457 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,471,158 to 1,472,372 _1457 EX28DRAFT_1458: EX28DRAFT_1458 - Uncharacterized conserved protein, at 1,472,482 to 1,472,808 _1458 EX28DRAFT_1459: EX28DRAFT_1459 - Protein of unknown function (DUF1283), at 1,472,960 to 1,473,298 _1459 EX28DRAFT_1460: EX28DRAFT_1460 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,473,298 to 1,473,858 _1460 EX28DRAFT_1461: EX28DRAFT_1461 - Uncharacterised protein family (UPF0257), at 1,473,876 to 1,474,586 _1461 EX28DRAFT_1462: EX28DRAFT_1462 - Protein of unknown function (DUF1161), at 1,474,691 to 1,474,957 _1462 Position (kb) 1473 1474Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1472.342 kb on + strandat 1472.385 kb on + strandat 1472.386 kb on - strandat 1472.553 kb on - strand, within EX28DRAFT_1458at 1472.609 kb on + strand, within EX28DRAFT_1458at 1472.609 kb on + strand, within EX28DRAFT_1458at 1472.610 kb on - strand, within EX28DRAFT_1458at 1472.610 kb on - strand, within EX28DRAFT_1458at 1472.663 kb on - strand, within EX28DRAFT_1458at 1472.713 kb on + strand, within EX28DRAFT_1458at 1472.808 kb on + strandat 1472.808 kb on + strandat 1472.835 kb on - strandat 1472.933 kb on + strandat 1472.946 kb on + strandat 1472.971 kb on - strandat 1473.318 kb on + strandat 1473.410 kb on - strand, within EX28DRAFT_1460at 1473.565 kb on - strand, within EX28DRAFT_1460at 1473.649 kb on + strand, within EX28DRAFT_1460at 1473.650 kb on - strand, within EX28DRAFT_1460at 1473.771 kb on + strand, within EX28DRAFT_1460at 1473.771 kb on + strand, within EX28DRAFT_1460at 1473.907 kb on + strandat 1473.907 kb on + strandat 1473.908 kb on - strandat 1473.908 kb on - strandat 1473.908 kb on - strandat 1473.971 kb on + strand, within EX28DRAFT_1461at 1474.070 kb on + strand, within EX28DRAFT_1461at 1474.147 kb on + strand, within EX28DRAFT_1461at 1474.153 kb on + strand, within EX28DRAFT_1461at 1474.297 kb on + strand, within EX28DRAFT_1461at 1474.298 kb on - strand, within EX28DRAFT_1461at 1474.300 kb on + strand, within EX28DRAFT_1461at 1474.300 kb on + strand, within EX28DRAFT_1461at 1474.301 kb on - strand, within EX28DRAFT_1461at 1474.576 kb on + strandat 1474.590 kb on + strandat 1474.621 kb on + strandat 1474.632 kb on - strandat 1474.661 kb on + strandat 1474.686 kb on + strandat 1474.726 kb on - strand, within EX28DRAFT_1462

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,472,342 + -0.6
1,472,385 + +1.0
1,472,386 - -0.1
1,472,553 - EX28DRAFT_1458 0.22 -1.8
1,472,609 + EX28DRAFT_1458 0.39 +0.2
1,472,609 + EX28DRAFT_1458 0.39 +0.1
1,472,610 - EX28DRAFT_1458 0.39 +0.3
1,472,610 - EX28DRAFT_1458 0.39 +0.0
1,472,663 - EX28DRAFT_1458 0.55 -0.2
1,472,713 + EX28DRAFT_1458 0.71 -0.5
1,472,808 + +1.2
1,472,808 + -0.7
1,472,835 - +0.1
1,472,933 + +1.4
1,472,946 + -0.5
1,472,971 - -0.5
1,473,318 + +0.5
1,473,410 - EX28DRAFT_1460 0.20 -1.2
1,473,565 - EX28DRAFT_1460 0.48 -1.3
1,473,649 + EX28DRAFT_1460 0.63 -2.0
1,473,650 - EX28DRAFT_1460 0.63 -0.5
1,473,771 + EX28DRAFT_1460 0.84 -0.6
1,473,771 + EX28DRAFT_1460 0.84 +0.3
1,473,907 + -1.5
1,473,907 + -1.3
1,473,908 - +2.2
1,473,908 - -0.1
1,473,908 - +0.5
1,473,971 + EX28DRAFT_1461 0.13 +0.5
1,474,070 + EX28DRAFT_1461 0.27 -0.8
1,474,147 + EX28DRAFT_1461 0.38 -3.2
1,474,153 + EX28DRAFT_1461 0.39 -0.4
1,474,297 + EX28DRAFT_1461 0.59 -1.2
1,474,298 - EX28DRAFT_1461 0.59 -0.3
1,474,300 + EX28DRAFT_1461 0.60 +0.4
1,474,300 + EX28DRAFT_1461 0.60 -0.3
1,474,301 - EX28DRAFT_1461 0.60 +0.2
1,474,576 + +0.9
1,474,590 + +0.8
1,474,621 + -2.6
1,474,632 - -0.1
1,474,661 + -1.1
1,474,686 + +0.2
1,474,726 - EX28DRAFT_1462 0.13 +0.5

Or see this region's nucleotide sequence