Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1457

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1456 and EX28DRAFT_1457 are separated by 14 nucleotidesEX28DRAFT_1457 and EX28DRAFT_1458 are separated by 109 nucleotidesEX28DRAFT_1458 and EX28DRAFT_1459 are separated by 151 nucleotidesEX28DRAFT_1459 and EX28DRAFT_1460 overlap by 1 nucleotides EX28DRAFT_1456: EX28DRAFT_1456 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 1,470,124 to 1,471,143 _1456 EX28DRAFT_1457: EX28DRAFT_1457 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,471,158 to 1,472,372 _1457 EX28DRAFT_1458: EX28DRAFT_1458 - Uncharacterized conserved protein, at 1,472,482 to 1,472,808 _1458 EX28DRAFT_1459: EX28DRAFT_1459 - Protein of unknown function (DUF1283), at 1,472,960 to 1,473,298 _1459 EX28DRAFT_1460: EX28DRAFT_1460 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,473,298 to 1,473,858 _1460 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -2 -1 0 1at 1470.196 kb on + strandat 1470.593 kb on + strand, within EX28DRAFT_1456at 1470.594 kb on - strand, within EX28DRAFT_1456at 1470.594 kb on - strand, within EX28DRAFT_1456at 1470.594 kb on - strand, within EX28DRAFT_1456at 1470.644 kb on + strand, within EX28DRAFT_1456at 1470.645 kb on - strand, within EX28DRAFT_1456at 1471.013 kb on + strand, within EX28DRAFT_1456at 1471.013 kb on + strand, within EX28DRAFT_1456at 1471.133 kb on - strandat 1471.283 kb on + strand, within EX28DRAFT_1457at 1471.283 kb on + strand, within EX28DRAFT_1457at 1471.347 kb on - strand, within EX28DRAFT_1457at 1471.347 kb on - strand, within EX28DRAFT_1457at 1471.348 kb on + strand, within EX28DRAFT_1457at 1471.348 kb on + strand, within EX28DRAFT_1457at 1471.348 kb on + strand, within EX28DRAFT_1457at 1471.356 kb on + strand, within EX28DRAFT_1457at 1471.357 kb on - strand, within EX28DRAFT_1457at 1471.525 kb on + strand, within EX28DRAFT_1457at 1471.526 kb on - strand, within EX28DRAFT_1457at 1471.578 kb on + strand, within EX28DRAFT_1457at 1471.579 kb on - strand, within EX28DRAFT_1457at 1471.579 kb on - strand, within EX28DRAFT_1457at 1471.608 kb on - strand, within EX28DRAFT_1457at 1471.811 kb on - strand, within EX28DRAFT_1457at 1472.161 kb on + strand, within EX28DRAFT_1457at 1472.162 kb on - strand, within EX28DRAFT_1457at 1472.162 kb on - strand, within EX28DRAFT_1457at 1472.162 kb on - strand, within EX28DRAFT_1457at 1472.342 kb on + strandat 1472.385 kb on + strandat 1472.386 kb on - strandat 1472.553 kb on - strand, within EX28DRAFT_1458at 1472.609 kb on + strand, within EX28DRAFT_1458at 1472.609 kb on + strand, within EX28DRAFT_1458at 1472.610 kb on - strand, within EX28DRAFT_1458at 1472.610 kb on - strand, within EX28DRAFT_1458at 1472.663 kb on - strand, within EX28DRAFT_1458at 1472.713 kb on + strand, within EX28DRAFT_1458at 1472.808 kb on + strandat 1472.808 kb on + strandat 1472.835 kb on - strandat 1472.933 kb on + strandat 1472.946 kb on + strandat 1472.971 kb on - strandat 1473.318 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,470,196 + -2.6
1,470,593 + EX28DRAFT_1456 0.46 +0.8
1,470,594 - EX28DRAFT_1456 0.46 -0.2
1,470,594 - EX28DRAFT_1456 0.46 +0.9
1,470,594 - EX28DRAFT_1456 0.46 -0.6
1,470,644 + EX28DRAFT_1456 0.51 -0.4
1,470,645 - EX28DRAFT_1456 0.51 -1.2
1,471,013 + EX28DRAFT_1456 0.87 -1.3
1,471,013 + EX28DRAFT_1456 0.87 -0.8
1,471,133 - -1.7
1,471,283 + EX28DRAFT_1457 0.10 -0.6
1,471,283 + EX28DRAFT_1457 0.10 -0.0
1,471,347 - EX28DRAFT_1457 0.16 +0.8
1,471,347 - EX28DRAFT_1457 0.16 +0.7
1,471,348 + EX28DRAFT_1457 0.16 +0.5
1,471,348 + EX28DRAFT_1457 0.16 -0.1
1,471,348 + EX28DRAFT_1457 0.16 +0.5
1,471,356 + EX28DRAFT_1457 0.16 +0.1
1,471,357 - EX28DRAFT_1457 0.16 +1.1
1,471,525 + EX28DRAFT_1457 0.30 +0.6
1,471,526 - EX28DRAFT_1457 0.30 -0.5
1,471,578 + EX28DRAFT_1457 0.35 +0.0
1,471,579 - EX28DRAFT_1457 0.35 +0.3
1,471,579 - EX28DRAFT_1457 0.35 +1.7
1,471,608 - EX28DRAFT_1457 0.37 +0.7
1,471,811 - EX28DRAFT_1457 0.54 +1.5
1,472,161 + EX28DRAFT_1457 0.83 -0.1
1,472,162 - EX28DRAFT_1457 0.83 +0.6
1,472,162 - EX28DRAFT_1457 0.83 -0.5
1,472,162 - EX28DRAFT_1457 0.83 -0.0
1,472,342 + -0.6
1,472,385 + +1.0
1,472,386 - -0.1
1,472,553 - EX28DRAFT_1458 0.22 -1.8
1,472,609 + EX28DRAFT_1458 0.39 +0.2
1,472,609 + EX28DRAFT_1458 0.39 +0.1
1,472,610 - EX28DRAFT_1458 0.39 +0.3
1,472,610 - EX28DRAFT_1458 0.39 +0.0
1,472,663 - EX28DRAFT_1458 0.55 -0.2
1,472,713 + EX28DRAFT_1458 0.71 -0.5
1,472,808 + +1.2
1,472,808 + -0.7
1,472,835 - +0.1
1,472,933 + +1.4
1,472,946 + -0.5
1,472,971 - -0.5
1,473,318 + +0.5

Or see this region's nucleotide sequence