Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1316

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1314 and EX28DRAFT_1315 are separated by 31 nucleotidesEX28DRAFT_1315 and EX28DRAFT_1316 are separated by 475 nucleotidesEX28DRAFT_1316 and EX28DRAFT_1317 are separated by 411 nucleotidesEX28DRAFT_1317 and EX28DRAFT_1318 are separated by 69 nucleotides EX28DRAFT_1314: EX28DRAFT_1314 - SOS-response transcriptional repressors (RecA-mediated autopeptidases), at 1,317,439 to 1,318,155 _1314 EX28DRAFT_1315: EX28DRAFT_1315 - hypothetical protein, at 1,318,187 to 1,318,573 _1315 EX28DRAFT_1316: EX28DRAFT_1316 - hypothetical protein, at 1,319,049 to 1,319,327 _1316 EX28DRAFT_1317: EX28DRAFT_1317 - Protein of unknown function (DUF1482), at 1,319,739 to 1,319,936 _1317 EX28DRAFT_1318: EX28DRAFT_1318 - hypothetical protein, at 1,320,006 to 1,320,401 _1318 Position (kb) 1319 1320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1318.165 kb on - strandat 1318.271 kb on + strand, within EX28DRAFT_1315at 1318.272 kb on - strand, within EX28DRAFT_1315at 1318.272 kb on - strand, within EX28DRAFT_1315at 1318.289 kb on + strand, within EX28DRAFT_1315at 1318.330 kb on + strand, within EX28DRAFT_1315at 1318.352 kb on - strand, within EX28DRAFT_1315at 1318.358 kb on - strand, within EX28DRAFT_1315at 1318.396 kb on - strand, within EX28DRAFT_1315at 1318.400 kb on + strand, within EX28DRAFT_1315at 1318.400 kb on + strand, within EX28DRAFT_1315at 1318.400 kb on + strand, within EX28DRAFT_1315at 1318.400 kb on + strand, within EX28DRAFT_1315at 1318.401 kb on - strand, within EX28DRAFT_1315at 1318.401 kb on - strand, within EX28DRAFT_1315at 1318.401 kb on - strand, within EX28DRAFT_1315at 1318.401 kb on - strand, within EX28DRAFT_1315at 1318.485 kb on + strand, within EX28DRAFT_1315at 1318.485 kb on + strand, within EX28DRAFT_1315at 1318.485 kb on + strand, within EX28DRAFT_1315at 1318.485 kb on + strand, within EX28DRAFT_1315at 1318.559 kb on + strandat 1318.560 kb on - strandat 1318.562 kb on - strandat 1318.562 kb on - strandat 1318.562 kb on - strandat 1318.566 kb on - strandat 1318.608 kb on + strandat 1318.609 kb on - strandat 1318.743 kb on + strandat 1318.744 kb on - strandat 1318.869 kb on + strandat 1318.919 kb on - strandat 1318.931 kb on - strandat 1318.971 kb on - strandat 1319.035 kb on + strandat 1319.114 kb on + strand, within EX28DRAFT_1316at 1319.115 kb on - strand, within EX28DRAFT_1316at 1319.115 kb on - strand, within EX28DRAFT_1316at 1319.182 kb on + strand, within EX28DRAFT_1316at 1319.183 kb on - strand, within EX28DRAFT_1316at 1319.227 kb on - strand, within EX28DRAFT_1316at 1319.239 kb on + strand, within EX28DRAFT_1316at 1319.239 kb on + strand, within EX28DRAFT_1316at 1319.275 kb on + strand, within EX28DRAFT_1316at 1319.275 kb on + strand, within EX28DRAFT_1316at 1319.318 kb on - strandat 1319.364 kb on + strandat 1319.417 kb on + strandat 1319.418 kb on - strandat 1319.509 kb on - strandat 1319.569 kb on + strandat 1319.569 kb on + strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.570 kb on - strandat 1319.609 kb on + strandat 1319.967 kb on - strandat 1320.150 kb on + strand, within EX28DRAFT_1318at 1320.151 kb on - strand, within EX28DRAFT_1318at 1320.151 kb on - strand, within EX28DRAFT_1318at 1320.241 kb on - strand, within EX28DRAFT_1318at 1320.294 kb on + strand, within EX28DRAFT_1318at 1320.295 kb on - strand, within EX28DRAFT_1318

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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1,318,165 - -0.8
1,318,271 + EX28DRAFT_1315 0.22 +1.8
1,318,272 - EX28DRAFT_1315 0.22 +0.4
1,318,272 - EX28DRAFT_1315 0.22 +4.5
1,318,289 + EX28DRAFT_1315 0.26 -1.1
1,318,330 + EX28DRAFT_1315 0.37 +1.1
1,318,352 - EX28DRAFT_1315 0.43 -0.9
1,318,358 - EX28DRAFT_1315 0.44 -0.1
1,318,396 - EX28DRAFT_1315 0.54 -0.8
1,318,400 + EX28DRAFT_1315 0.55 -2.2
1,318,400 + EX28DRAFT_1315 0.55 +0.1
1,318,400 + EX28DRAFT_1315 0.55 -0.5
1,318,400 + EX28DRAFT_1315 0.55 -1.3
1,318,401 - EX28DRAFT_1315 0.55 +2.0
1,318,401 - EX28DRAFT_1315 0.55 +1.1
1,318,401 - EX28DRAFT_1315 0.55 -1.2
1,318,401 - EX28DRAFT_1315 0.55 -1.5
1,318,485 + EX28DRAFT_1315 0.77 -1.5
1,318,485 + EX28DRAFT_1315 0.77 +0.5
1,318,485 + EX28DRAFT_1315 0.77 -1.3
1,318,485 + EX28DRAFT_1315 0.77 -3.8
1,318,559 + -0.7
1,318,560 - -2.5
1,318,562 - +1.0
1,318,562 - -0.8
1,318,562 - +0.1
1,318,566 - +1.1
1,318,608 + -1.8
1,318,609 - -0.7
1,318,743 + -0.4
1,318,744 - +0.4
1,318,869 + -0.1
1,318,919 - -1.3
1,318,931 - +0.8
1,318,971 - +0.4
1,319,035 + -0.3
1,319,114 + EX28DRAFT_1316 0.23 -0.7
1,319,115 - EX28DRAFT_1316 0.24 +1.1
1,319,115 - EX28DRAFT_1316 0.24 -0.7
1,319,182 + EX28DRAFT_1316 0.48 -0.9
1,319,183 - EX28DRAFT_1316 0.48 -0.5
1,319,227 - EX28DRAFT_1316 0.64 -0.3
1,319,239 + EX28DRAFT_1316 0.68 +0.1
1,319,239 + EX28DRAFT_1316 0.68 -0.0
1,319,275 + EX28DRAFT_1316 0.81 +0.2
1,319,275 + EX28DRAFT_1316 0.81 +0.5
1,319,318 - +0.0
1,319,364 + +0.3
1,319,417 + +0.1
1,319,418 - +0.5
1,319,509 - +1.3
1,319,569 + +0.5
1,319,569 + +0.8
1,319,570 - -1.7
1,319,570 - +1.0
1,319,570 - -0.1
1,319,570 - +0.5
1,319,609 + -0.8
1,319,967 - -0.1
1,320,150 + EX28DRAFT_1318 0.36 -1.7
1,320,151 - EX28DRAFT_1318 0.37 +2.2
1,320,151 - EX28DRAFT_1318 0.37 +0.4
1,320,241 - EX28DRAFT_1318 0.59 +0.8
1,320,294 + EX28DRAFT_1318 0.73 -1.5
1,320,295 - EX28DRAFT_1318 0.73 +1.9

Or see this region's nucleotide sequence