Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0954 and EX28DRAFT_0955 overlap by 1 nucleotides EX28DRAFT_0955 and EX28DRAFT_0956 are separated by 105 nucleotides EX28DRAFT_0956 and EX28DRAFT_0957 are separated by 263 nucleotides EX28DRAFT_0957 and EX28DRAFT_0958 are separated by 37 nucleotides EX28DRAFT_0958 and EX28DRAFT_0959 are separated by 166 nucleotides
EX28DRAFT_0954: EX28DRAFT_0954 - orotidine-5'-phosphate decarboxylase (EC 4.1.1.23), at 954,228 to 954,965
_0954
EX28DRAFT_0955: EX28DRAFT_0955 - translation initation factor SUI1, putative, prokaryotic, at 954,965 to 955,291
_0955
EX28DRAFT_0956: EX28DRAFT_0956 - Glycine zipper 2TM domain, at 955,397 to 955,615
_0956
EX28DRAFT_0957: EX28DRAFT_0957 - transcriptional regulator, DeoR family, at 955,879 to 956,631
_0957
EX28DRAFT_0958: EX28DRAFT_0958 - hypothetical protein, at 956,669 to 956,884
_0958
EX28DRAFT_0959: EX28DRAFT_0959 - Enoyl-CoA hydratase/carnithine racemase, at 957,051 to 957,920
_0959
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 954.992 kb on + strand at 954.992 kb on + strand at 955.012 kb on + strand, within EX28DRAFT_0955 at 955.264 kb on + strand at 955.328 kb on - strand at 955.329 kb on + strand at 955.329 kb on + strand at 955.329 kb on + strand at 955.330 kb on - strand at 955.331 kb on + strand at 955.332 kb on - strand at 955.332 kb on - strand at 955.332 kb on - strand at 955.332 kb on - strand at 955.332 kb on - strand at 955.340 kb on - strand at 955.340 kb on - strand at 955.424 kb on - strand, within EX28DRAFT_0956 at 955.445 kb on + strand, within EX28DRAFT_0956 at 955.445 kb on + strand, within EX28DRAFT_0956 at 955.462 kb on + strand, within EX28DRAFT_0956 at 955.475 kb on + strand, within EX28DRAFT_0956 at 955.510 kb on + strand, within EX28DRAFT_0956 at 955.532 kb on - strand, within EX28DRAFT_0956 at 955.566 kb on - strand, within EX28DRAFT_0956 at 955.607 kb on + strand at 955.616 kb on - strand at 955.619 kb on - strand at 955.619 kb on - strand at 955.619 kb on - strand at 955.653 kb on + strand at 955.653 kb on + strand at 955.654 kb on - strand at 955.654 kb on - strand at 955.660 kb on + strand at 955.660 kb on + strand at 955.661 kb on - strand at 955.680 kb on - strand at 955.683 kb on + strand at 955.810 kb on - strand at 955.818 kb on - strand at 955.818 kb on - strand at 955.849 kb on - strand at 955.894 kb on - strand at 955.897 kb on - strand at 955.897 kb on - strand at 955.899 kb on + strand at 955.999 kb on - strand, within EX28DRAFT_0957 at 956.194 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.276 kb on + strand, within EX28DRAFT_0957 at 956.341 kb on - strand, within EX28DRAFT_0957 at 956.424 kb on - strand, within EX28DRAFT_0957 at 956.496 kb on - strand, within EX28DRAFT_0957 at 956.559 kb on + strand at 956.631 kb on + strand at 956.631 kb on + strand at 956.632 kb on - strand at 956.632 kb on - strand at 956.642 kb on + strand at 956.940 kb on + strand at 956.955 kb on + strand at 956.956 kb on - strand at 957.050 kb on + strand at 957.051 kb on - strand at 957.051 kb on - strand at 957.060 kb on - strand at 957.071 kb on + strand at 957.123 kb on + strand at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.194 kb on - strand, within EX28DRAFT_0959 at 957.196 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.285 kb on + strand, within EX28DRAFT_0959 at 957.286 kb on - strand, within EX28DRAFT_0959 at 957.304 kb on + strand, within EX28DRAFT_0959 at 957.558 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.609 kb on + strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959 at 957.610 kb on - strand, within EX28DRAFT_0959
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 954,992 + +0.0 954,992 + -0.6 955,012 + EX28DRAFT_0955 0.14 +0.1 955,264 + -1.0 955,328 - +0.6 955,329 + +0.6 955,329 + -0.6 955,329 + -0.9 955,330 - -0.2 955,331 + -1.5 955,332 - +2.1 955,332 - -1.2 955,332 - -3.1 955,332 - +0.7 955,332 - +0.4 955,340 - +2.7 955,340 - +0.7 955,424 - EX28DRAFT_0956 0.12 -0.9 955,445 + EX28DRAFT_0956 0.22 +1.1 955,445 + EX28DRAFT_0956 0.22 -0.2 955,462 + EX28DRAFT_0956 0.30 -0.5 955,475 + EX28DRAFT_0956 0.36 +0.4 955,510 + EX28DRAFT_0956 0.52 +0.2 955,532 - EX28DRAFT_0956 0.62 -0.5 955,566 - EX28DRAFT_0956 0.77 -0.3 955,607 + -1.1 955,616 - -1.0 955,619 - +0.4 955,619 - -0.2 955,619 - +0.1 955,653 + +0.1 955,653 + -0.6 955,654 - -1.7 955,654 - +0.1 955,660 + -2.0 955,660 + -1.4 955,661 - +0.0 955,680 - +2.8 955,683 + +0.0 955,810 - +0.6 955,818 - -1.4 955,818 - -0.4 955,849 - -2.6 955,894 - +0.8 955,897 - +0.3 955,897 - -0.8 955,899 + +0.6 955,999 - EX28DRAFT_0957 0.16 -1.3 956,194 + EX28DRAFT_0957 0.42 -3.8 956,276 + EX28DRAFT_0957 0.53 -0.8 956,276 + EX28DRAFT_0957 0.53 -0.2 956,276 + EX28DRAFT_0957 0.53 -0.6 956,276 + EX28DRAFT_0957 0.53 -0.2 956,276 + EX28DRAFT_0957 0.53 -0.6 956,341 - EX28DRAFT_0957 0.61 -1.8 956,424 - EX28DRAFT_0957 0.72 -0.4 956,496 - EX28DRAFT_0957 0.82 +0.1 956,559 + -0.8 956,631 + -0.9 956,631 + -0.5 956,632 - -0.8 956,632 - -2.1 956,642 + +0.9 956,940 + -0.1 956,955 + +0.2 956,956 - +0.1 957,050 + +0.2 957,051 - -0.2 957,051 - -0.9 957,060 - -1.6 957,071 + -0.1 957,123 + -1.2 957,194 - EX28DRAFT_0959 0.16 +0.0 957,194 - EX28DRAFT_0959 0.16 -0.5 957,196 + EX28DRAFT_0959 0.17 +0.1 957,285 + EX28DRAFT_0959 0.27 +0.2 957,285 + EX28DRAFT_0959 0.27 +0.5 957,285 + EX28DRAFT_0959 0.27 -0.2 957,285 + EX28DRAFT_0959 0.27 -0.9 957,286 - EX28DRAFT_0959 0.27 -1.6 957,304 + EX28DRAFT_0959 0.29 +0.4 957,558 + EX28DRAFT_0959 0.58 +1.7 957,609 + EX28DRAFT_0959 0.64 +0.2 957,609 + EX28DRAFT_0959 0.64 +0.0 957,610 - EX28DRAFT_0959 0.64 +0.5 957,610 - EX28DRAFT_0959 0.64 -1.7 957,610 - EX28DRAFT_0959 0.64 +1.4
Or see this region's nucleotide sequence