Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0685 and EX28DRAFT_0686 are separated by 189 nucleotides EX28DRAFT_0686 and EX28DRAFT_0687 overlap by 4 nucleotides EX28DRAFT_0687 and EX28DRAFT_0688 are separated by 40 nucleotides
EX28DRAFT_0685: EX28DRAFT_0685 - Uncharacterized protein involved in copper resistance, at 683,964 to 684,707
_0685
EX28DRAFT_0686: EX28DRAFT_0686 - tRNA (mo5U34)-methyltransferase, at 684,897 to 685,868
_0686
EX28DRAFT_0687: EX28DRAFT_0687 - tRNA (cmo5U34)-methyltransferase, at 685,865 to 686,608
_0687
EX28DRAFT_0688: EX28DRAFT_0688 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 686,649 to 687,044
_0688
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 683.962 kb on - strand at 683.989 kb on - strand at 684.082 kb on - strand, within EX28DRAFT_0685 at 684.162 kb on + strand, within EX28DRAFT_0685 at 684.338 kb on + strand, within EX28DRAFT_0685 at 684.339 kb on - strand, within EX28DRAFT_0685 at 684.479 kb on - strand, within EX28DRAFT_0685 at 684.572 kb on - strand, within EX28DRAFT_0685 at 684.713 kb on + strand at 684.746 kb on - strand at 684.809 kb on + strand at 685.271 kb on - strand, within EX28DRAFT_0686 at 685.493 kb on + strand, within EX28DRAFT_0686 at 685.494 kb on - strand, within EX28DRAFT_0686 at 685.494 kb on - strand, within EX28DRAFT_0686 at 686.041 kb on - strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.483 kb on - strand, within EX28DRAFT_0687 at 686.640 kb on + strand at 686.641 kb on - strand at 686.681 kb on + strand at 686.681 kb on + strand at 686.682 kb on - strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.801 kb on + strand, within EX28DRAFT_0688 at 686.855 kb on + strand, within EX28DRAFT_0688
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 683,962 - -0.7 683,989 - +0.0 684,082 - EX28DRAFT_0685 0.16 -1.6 684,162 + EX28DRAFT_0685 0.27 -0.5 684,338 + EX28DRAFT_0685 0.50 -0.1 684,339 - EX28DRAFT_0685 0.50 +0.5 684,479 - EX28DRAFT_0685 0.69 -0.9 684,572 - EX28DRAFT_0685 0.82 -1.1 684,713 + +0.2 684,746 - +1.2 684,809 + -0.4 685,271 - EX28DRAFT_0686 0.38 -2.2 685,493 + EX28DRAFT_0686 0.61 -1.4 685,494 - EX28DRAFT_0686 0.61 -1.4 685,494 - EX28DRAFT_0686 0.61 +0.7 686,041 - EX28DRAFT_0687 0.24 -0.3 686,482 + EX28DRAFT_0687 0.83 +0.1 686,482 + EX28DRAFT_0687 0.83 +3.4 686,483 - EX28DRAFT_0687 0.83 -2.8 686,640 + +2.1 686,641 - -0.9 686,681 + +0.1 686,681 + +1.1 686,682 - +0.4 686,683 + -0.5 686,683 + -0.1 686,683 + +0.3 686,683 + -0.0 686,684 - +1.4 686,684 - +1.2 686,684 - +0.6 686,684 - -0.3 686,780 - EX28DRAFT_0688 0.33 +0.2 686,780 - EX28DRAFT_0688 0.33 -0.4 686,801 + EX28DRAFT_0688 0.38 -0.1 686,855 + EX28DRAFT_0688 0.52 -0.9
Or see this region's nucleotide sequence