Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0657

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0656 and EX28DRAFT_0657 are separated by 15 nucleotidesEX28DRAFT_0657 and EX28DRAFT_0658 are separated by 794 nucleotides EX28DRAFT_0656: EX28DRAFT_0656 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 650,489 to 651,913 _0656 EX28DRAFT_0657: EX28DRAFT_0657 - Universal stress protein UspA and related nucleotide-binding proteins, at 651,929 to 652,357 _0657 EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502 _0658 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2 3at 651.088 kb on + strand, within EX28DRAFT_0656at 651.089 kb on - strand, within EX28DRAFT_0656at 651.233 kb on - strand, within EX28DRAFT_0656at 651.600 kb on - strand, within EX28DRAFT_0656at 651.760 kb on + strand, within EX28DRAFT_0656at 651.805 kb on + strandat 651.841 kb on - strandat 651.841 kb on - strandat 651.916 kb on + strandat 651.982 kb on + strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.069 kb on + strand, within EX28DRAFT_0657at 652.079 kb on - strand, within EX28DRAFT_0657at 652.116 kb on + strand, within EX28DRAFT_0657at 652.197 kb on - strand, within EX28DRAFT_0657at 652.220 kb on - strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.442 kb on + strandat 652.474 kb on + strandat 652.641 kb on + strandat 652.643 kb on + strandat 652.691 kb on + strandat 652.692 kb on - strandat 652.775 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.958 kb on + strandat 652.962 kb on + strandat 652.962 kb on + strandat 652.987 kb on + strandat 652.988 kb on - strandat 652.988 kb on - strandat 653.015 kb on - strandat 653.029 kb on + strandat 653.030 kb on - strandat 653.030 kb on - strandat 653.047 kb on + strandat 653.048 kb on - strandat 653.055 kb on + strandat 653.055 kb on + strandat 653.124 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.127 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.157 kb on + strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.158 kb on - strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.171 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.178 kb on + strandat 653.179 kb on - strandat 653.179 kb on - strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.182 kb on + strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.183 kb on - strandat 653.201 kb on - strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.204 kb on + strand, within EX28DRAFT_0658at 653.205 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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651,088 + EX28DRAFT_0656 0.42 +0.6
651,089 - EX28DRAFT_0656 0.42 -2.5
651,233 - EX28DRAFT_0656 0.52 -0.2
651,600 - EX28DRAFT_0656 0.78 -1.2
651,760 + EX28DRAFT_0656 0.89 -0.3
651,805 + -0.2
651,841 - -1.4
651,841 - +0.5
651,916 + -0.3
651,982 + EX28DRAFT_0657 0.12 +0.0
652,044 - EX28DRAFT_0657 0.27 -0.6
652,044 - EX28DRAFT_0657 0.27 +0.3
652,069 + EX28DRAFT_0657 0.33 -0.3
652,079 - EX28DRAFT_0657 0.35 -1.0
652,116 + EX28DRAFT_0657 0.44 +0.5
652,197 - EX28DRAFT_0657 0.62 -1.0
652,220 - EX28DRAFT_0657 0.68 -1.0
652,221 + EX28DRAFT_0657 0.68 -0.4
652,221 + EX28DRAFT_0657 0.68 +1.1
652,222 - EX28DRAFT_0657 0.68 -0.3
652,222 - EX28DRAFT_0657 0.68 +3.7
652,222 - EX28DRAFT_0657 0.68 -0.2
652,442 + +0.5
652,474 + +0.3
652,641 + -1.0
652,643 + -1.3
652,691 + -0.8
652,692 - -0.5
652,775 + -1.2
652,909 + +0.6
652,909 + -0.8
652,909 + +1.5
652,909 + +1.1
652,909 + +0.7
652,909 + +0.4
652,910 - +0.9
652,910 - +0.4
652,910 - -0.1
652,958 + +1.1
652,962 + +1.1
652,962 + +1.7
652,987 + +1.0
652,988 - -1.3
652,988 - -1.9
653,015 - -0.3
653,029 + +1.0
653,030 - -0.9
653,030 - -0.2
653,047 + +0.8
653,048 - -1.4
653,055 + -0.7
653,055 + +1.1
653,124 + +2.1
653,127 + +1.2
653,127 + -0.1
653,127 + -0.0
653,157 + +0.8
653,157 + +0.2
653,157 + +1.3
653,157 + +2.1
653,157 + +0.6
653,157 + +1.0
653,157 + +0.2
653,157 + +1.0
653,157 + +0.5
653,157 + +0.1
653,157 + +2.3
653,158 - -0.2
653,158 - +0.5
653,158 - +0.5
653,171 + +1.4
653,171 + +0.4
653,171 + -0.5
653,171 + +0.9
653,178 + +0.3
653,178 + +1.5
653,178 + +1.6
653,179 - +0.2
653,179 - +0.4
653,182 + +1.3
653,182 + +1.5
653,182 + +0.9
653,182 + +2.0
653,182 + +0.9
653,182 + +1.1
653,182 + +0.5
653,182 + +1.0
653,183 - +0.6
653,183 - -1.5
653,183 - +1.8
653,183 - +0.6
653,201 - EX28DRAFT_0658 0.14 +0.4
653,204 + EX28DRAFT_0658 0.15 +1.5
653,204 + EX28DRAFT_0658 0.15 +2.1
653,205 - EX28DRAFT_0658 0.15 -1.5
653,227 - EX28DRAFT_0658 0.21 -0.0
653,227 - EX28DRAFT_0658 0.21 +0.5

Or see this region's nucleotide sequence