Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0653

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0652 and EX28DRAFT_0653 are separated by 71 nucleotidesEX28DRAFT_0653 and EX28DRAFT_0654 are separated by 14 nucleotides EX28DRAFT_0652: EX28DRAFT_0652 - ABC-type sugar transport system, periplasmic component, at 645,958 to 646,947 _0652 EX28DRAFT_0653: EX28DRAFT_0653 - ABC-type sugar transport system, ATPase component, at 647,019 to 648,533 _0653 EX28DRAFT_0654: EX28DRAFT_0654 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 648,548 to 649,534 _0654 Position (kb) 647 648 649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 646.212 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.390 kb on + strand, within EX28DRAFT_0652at 646.391 kb on - strand, within EX28DRAFT_0652at 646.391 kb on - strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.534 kb on + strand, within EX28DRAFT_0652at 646.535 kb on - strand, within EX28DRAFT_0652at 646.535 kb on - strand, within EX28DRAFT_0652at 646.591 kb on - strand, within EX28DRAFT_0652at 646.591 kb on - strand, within EX28DRAFT_0652at 646.771 kb on + strand, within EX28DRAFT_0652at 646.828 kb on + strand, within EX28DRAFT_0652at 646.866 kb on + strandat 646.945 kb on + strandat 646.945 kb on + strandat 646.946 kb on - strandat 646.949 kb on - strandat 646.949 kb on - strandat 646.949 kb on - strandat 646.991 kb on + strandat 646.991 kb on + strandat 646.992 kb on - strandat 647.037 kb on + strandat 647.109 kb on + strandat 647.110 kb on - strandat 647.187 kb on + strand, within EX28DRAFT_0653at 647.187 kb on + strand, within EX28DRAFT_0653at 647.188 kb on - strand, within EX28DRAFT_0653at 647.188 kb on - strand, within EX28DRAFT_0653at 647.195 kb on + strand, within EX28DRAFT_0653at 647.196 kb on - strand, within EX28DRAFT_0653at 647.328 kb on + strand, within EX28DRAFT_0653at 647.328 kb on + strand, within EX28DRAFT_0653at 647.329 kb on - strand, within EX28DRAFT_0653at 647.329 kb on - strand, within EX28DRAFT_0653at 647.333 kb on - strand, within EX28DRAFT_0653at 647.333 kb on - strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.378 kb on + strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.379 kb on - strand, within EX28DRAFT_0653at 647.382 kb on + strand, within EX28DRAFT_0653at 647.383 kb on - strand, within EX28DRAFT_0653at 647.402 kb on + strand, within EX28DRAFT_0653at 647.402 kb on + strand, within EX28DRAFT_0653at 647.635 kb on + strand, within EX28DRAFT_0653at 647.636 kb on - strand, within EX28DRAFT_0653at 647.636 kb on - strand, within EX28DRAFT_0653at 647.763 kb on + strand, within EX28DRAFT_0653at 647.764 kb on - strand, within EX28DRAFT_0653at 647.960 kb on + strand, within EX28DRAFT_0653at 648.038 kb on + strand, within EX28DRAFT_0653at 648.085 kb on + strand, within EX28DRAFT_0653at 648.087 kb on - strand, within EX28DRAFT_0653at 648.183 kb on - strand, within EX28DRAFT_0653at 648.247 kb on + strand, within EX28DRAFT_0653at 648.269 kb on + strand, within EX28DRAFT_0653at 648.269 kb on + strand, within EX28DRAFT_0653at 648.269 kb on + strand, within EX28DRAFT_0653at 648.333 kb on + strand, within EX28DRAFT_0653at 648.333 kb on + strand, within EX28DRAFT_0653at 648.334 kb on - strand, within EX28DRAFT_0653at 648.335 kb on + strand, within EX28DRAFT_0653at 648.335 kb on + strand, within EX28DRAFT_0653at 648.345 kb on + strand, within EX28DRAFT_0653at 648.345 kb on + strand, within EX28DRAFT_0653at 648.345 kb on + strand, within EX28DRAFT_0653at 648.346 kb on - strand, within EX28DRAFT_0653at 648.535 kb on + strandat 648.535 kb on + strandat 648.536 kb on - strandat 648.544 kb on - strandat 648.544 kb on - strandat 648.560 kb on - strandat 648.562 kb on + strandat 648.607 kb on + strandat 648.607 kb on + strandat 648.694 kb on + strand, within EX28DRAFT_0654at 648.697 kb on + strand, within EX28DRAFT_0654at 648.698 kb on - strand, within EX28DRAFT_0654at 648.698 kb on - strand, within EX28DRAFT_0654at 648.986 kb on + strand, within EX28DRAFT_0654at 648.988 kb on + strand, within EX28DRAFT_0654at 648.988 kb on + strand, within EX28DRAFT_0654at 648.989 kb on - strand, within EX28DRAFT_0654at 648.989 kb on - strand, within EX28DRAFT_0654at 649.145 kb on - strand, within EX28DRAFT_0654at 649.213 kb on + strand, within EX28DRAFT_0654at 649.258 kb on + strand, within EX28DRAFT_0654at 649.259 kb on - strand, within EX28DRAFT_0654at 649.259 kb on - strand, within EX28DRAFT_0654at 649.379 kb on + strand, within EX28DRAFT_0654at 649.380 kb on - strand, within EX28DRAFT_0654at 649.380 kb on - strand, within EX28DRAFT_0654at 649.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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646,212 + EX28DRAFT_0652 0.26 +0.0
646,390 + EX28DRAFT_0652 0.44 -1.6
646,390 + EX28DRAFT_0652 0.44 -0.3
646,390 + EX28DRAFT_0652 0.44 +0.8
646,391 - EX28DRAFT_0652 0.44 +0.2
646,391 - EX28DRAFT_0652 0.44 +4.7
646,534 + EX28DRAFT_0652 0.58 +0.2
646,534 + EX28DRAFT_0652 0.58 -0.6
646,534 + EX28DRAFT_0652 0.58 +0.1
646,535 - EX28DRAFT_0652 0.58 -2.5
646,535 - EX28DRAFT_0652 0.58 -3.3
646,591 - EX28DRAFT_0652 0.64 +0.3
646,591 - EX28DRAFT_0652 0.64 -0.2
646,771 + EX28DRAFT_0652 0.82 +0.4
646,828 + EX28DRAFT_0652 0.88 +0.7
646,866 + +0.2
646,945 + -0.2
646,945 + +0.4
646,946 - -0.0
646,949 - -1.2
646,949 - +0.2
646,949 - +0.3
646,991 + +1.5
646,991 + +0.0
646,992 - -1.4
647,037 + -0.9
647,109 + +0.1
647,110 - -0.1
647,187 + EX28DRAFT_0653 0.11 -0.8
647,187 + EX28DRAFT_0653 0.11 +1.1
647,188 - EX28DRAFT_0653 0.11 -0.0
647,188 - EX28DRAFT_0653 0.11 +0.4
647,195 + EX28DRAFT_0653 0.12 +0.1
647,196 - EX28DRAFT_0653 0.12 +0.1
647,328 + EX28DRAFT_0653 0.20 -0.4
647,328 + EX28DRAFT_0653 0.20 +0.6
647,329 - EX28DRAFT_0653 0.20 -0.7
647,329 - EX28DRAFT_0653 0.20 +1.3
647,333 - EX28DRAFT_0653 0.21 +0.9
647,333 - EX28DRAFT_0653 0.21 -0.1
647,378 + EX28DRAFT_0653 0.24 -0.8
647,378 + EX28DRAFT_0653 0.24 -0.0
647,378 + EX28DRAFT_0653 0.24 +0.8
647,378 + EX28DRAFT_0653 0.24 +0.9
647,379 - EX28DRAFT_0653 0.24 +0.1
647,379 - EX28DRAFT_0653 0.24 +0.4
647,379 - EX28DRAFT_0653 0.24 -1.5
647,382 + EX28DRAFT_0653 0.24 -0.8
647,383 - EX28DRAFT_0653 0.24 -0.8
647,402 + EX28DRAFT_0653 0.25 -0.4
647,402 + EX28DRAFT_0653 0.25 -0.0
647,635 + EX28DRAFT_0653 0.41 -0.2
647,636 - EX28DRAFT_0653 0.41 +0.1
647,636 - EX28DRAFT_0653 0.41 +0.1
647,763 + EX28DRAFT_0653 0.49 +0.0
647,764 - EX28DRAFT_0653 0.49 -0.2
647,960 + EX28DRAFT_0653 0.62 +0.5
648,038 + EX28DRAFT_0653 0.67 +0.6
648,085 + EX28DRAFT_0653 0.70 -0.3
648,087 - EX28DRAFT_0653 0.70 +0.8
648,183 - EX28DRAFT_0653 0.77 +0.3
648,247 + EX28DRAFT_0653 0.81 -0.2
648,269 + EX28DRAFT_0653 0.83 -1.1
648,269 + EX28DRAFT_0653 0.83 -0.5
648,269 + EX28DRAFT_0653 0.83 +1.2
648,333 + EX28DRAFT_0653 0.87 +0.2
648,333 + EX28DRAFT_0653 0.87 +0.5
648,334 - EX28DRAFT_0653 0.87 -3.0
648,335 + EX28DRAFT_0653 0.87 -0.6
648,335 + EX28DRAFT_0653 0.87 -0.0
648,345 + EX28DRAFT_0653 0.88 +1.5
648,345 + EX28DRAFT_0653 0.88 -1.7
648,345 + EX28DRAFT_0653 0.88 +2.1
648,346 - EX28DRAFT_0653 0.88 +0.6
648,535 + +0.3
648,535 + -0.3
648,536 - -0.9
648,544 - +0.2
648,544 - -0.6
648,560 - -0.2
648,562 + -1.1
648,607 + +0.3
648,607 + +0.2
648,694 + EX28DRAFT_0654 0.15 +0.5
648,697 + EX28DRAFT_0654 0.15 +1.6
648,698 - EX28DRAFT_0654 0.15 -0.1
648,698 - EX28DRAFT_0654 0.15 -0.3
648,986 + EX28DRAFT_0654 0.44 -0.7
648,988 + EX28DRAFT_0654 0.45 +0.3
648,988 + EX28DRAFT_0654 0.45 +0.4
648,989 - EX28DRAFT_0654 0.45 -1.3
648,989 - EX28DRAFT_0654 0.45 -0.3
649,145 - EX28DRAFT_0654 0.60 -1.3
649,213 + EX28DRAFT_0654 0.67 -0.0
649,258 + EX28DRAFT_0654 0.72 +0.8
649,259 - EX28DRAFT_0654 0.72 -0.3
649,259 - EX28DRAFT_0654 0.72 +0.8
649,379 + EX28DRAFT_0654 0.84 +1.0
649,380 - EX28DRAFT_0654 0.84 -0.4
649,380 - EX28DRAFT_0654 0.84 +0.3
649,457 + +0.2

Or see this region's nucleotide sequence