Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0522 and EX28DRAFT_0523 overlap by 14 nucleotides EX28DRAFT_0523 and EX28DRAFT_0524 are separated by 1 nucleotides EX28DRAFT_0524 and EX28DRAFT_0525 overlap by 8 nucleotides EX28DRAFT_0525 and EX28DRAFT_0526 are separated by 1 nucleotides
EX28DRAFT_0522: EX28DRAFT_0522 - hypothetical protein, at 515,517 to 516,776
_0522
EX28DRAFT_0523: EX28DRAFT_0523 - Glycosyltransferase like family 2, at 516,763 to 517,737
_0523
EX28DRAFT_0524: EX28DRAFT_0524 - hypothetical protein, at 517,739 to 518,887
_0524
EX28DRAFT_0525: EX28DRAFT_0525 - Bacterial transferase hexapeptide (six repeats), at 518,880 to 519,416
_0525
EX28DRAFT_0526: EX28DRAFT_0526 - hypothetical protein, at 519,418 to 520,428
_0526
Position (kb) 517
518
519 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 517.235 kb on + strand, within EX28DRAFT_0523 at 517.701 kb on + strand at 517.702 kb on - strand at 518.090 kb on + strand, within EX28DRAFT_0524 at 518.107 kb on + strand, within EX28DRAFT_0524 at 518.108 kb on - strand, within EX28DRAFT_0524 at 518.113 kb on - strand, within EX28DRAFT_0524 at 518.229 kb on + strand, within EX28DRAFT_0524 at 518.273 kb on + strand, within EX28DRAFT_0524 at 518.515 kb on + strand, within EX28DRAFT_0524 at 518.572 kb on - strand, within EX28DRAFT_0524 at 518.668 kb on + strand, within EX28DRAFT_0524
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 517,235 + EX28DRAFT_0523 0.48 -2.4 517,701 + -2.2 517,702 - +0.2 518,090 + EX28DRAFT_0524 0.31 +0.4 518,107 + EX28DRAFT_0524 0.32 -1.3 518,108 - EX28DRAFT_0524 0.32 -1.7 518,113 - EX28DRAFT_0524 0.33 -4.8 518,229 + EX28DRAFT_0524 0.43 -1.3 518,273 + EX28DRAFT_0524 0.46 -0.3 518,515 + EX28DRAFT_0524 0.68 -0.2 518,572 - EX28DRAFT_0524 0.72 -2.5 518,668 + EX28DRAFT_0524 0.81 -2.7
Or see this region's nucleotide sequence