Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0490 and EX28DRAFT_0491 are separated by 109 nucleotides EX28DRAFT_0491 and EX28DRAFT_0492 are separated by 476 nucleotides EX28DRAFT_0492 and EX28DRAFT_0493 are separated by 178 nucleotides
EX28DRAFT_0490: EX28DRAFT_0490 - Uncharacterized protein involved in outer membrane biogenesis, at 480,285 to 482,135
_0490
EX28DRAFT_0491: EX28DRAFT_0491 - Membrane protein TerC, possibly involved in tellurium resistance, at 482,245 to 483,828
_0491
EX28DRAFT_0492: EX28DRAFT_0492 - RNA, at 484,305 to 484,343
_0492
EX28DRAFT_0493: EX28DRAFT_0493 - Periplasmic protein involved in polysaccharide export, at 484,522 to 485,661
_0493
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1 at 481.263 kb on - strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.283 kb on + strand, within EX28DRAFT_0490 at 481.328 kb on + strand, within EX28DRAFT_0490 at 481.380 kb on - strand, within EX28DRAFT_0490 at 481.516 kb on + strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.543 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.736 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.741 kb on - strand, within EX28DRAFT_0490 at 481.802 kb on + strand, within EX28DRAFT_0490 at 481.803 kb on - strand, within EX28DRAFT_0490 at 481.815 kb on - strand, within EX28DRAFT_0490 at 481.838 kb on - strand, within EX28DRAFT_0490 at 481.975 kb on + strand at 481.975 kb on + strand at 482.002 kb on - strand at 482.002 kb on - strand at 482.134 kb on - strand at 482.243 kb on - strand at 482.246 kb on + strand at 482.410 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.450 kb on + strand, within EX28DRAFT_0491 at 482.475 kb on + strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.134 kb on - strand, within EX28DRAFT_0491 at 483.205 kb on - strand, within EX28DRAFT_0491 at 483.636 kb on + strand, within EX28DRAFT_0491 at 483.652 kb on + strand, within EX28DRAFT_0491 at 483.652 kb on + strand, within EX28DRAFT_0491 at 483.750 kb on + strand at 483.751 kb on - strand at 483.829 kb on - strand at 483.832 kb on - strand at 483.835 kb on - strand at 483.840 kb on + strand at 483.841 kb on - strand at 483.841 kb on - strand at 483.841 kb on - strand at 483.851 kb on - strand at 483.851 kb on - strand at 483.852 kb on + strand at 483.923 kb on - strand at 483.985 kb on + strand at 484.741 kb on - strand, within EX28DRAFT_0493 at 484.769 kb on - strand, within EX28DRAFT_0493
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 481,263 - EX28DRAFT_0490 0.53 +0.6 481,281 + EX28DRAFT_0490 0.54 -0.2 481,281 + EX28DRAFT_0490 0.54 -1.0 481,282 - EX28DRAFT_0490 0.54 +0.4 481,282 - EX28DRAFT_0490 0.54 +0.1 481,283 + EX28DRAFT_0490 0.54 +0.2 481,328 + EX28DRAFT_0490 0.56 -0.5 481,380 - EX28DRAFT_0490 0.59 +0.3 481,516 + EX28DRAFT_0490 0.67 +0.0 481,539 - EX28DRAFT_0490 0.68 -1.5 481,539 - EX28DRAFT_0490 0.68 -0.7 481,539 - EX28DRAFT_0490 0.68 -0.4 481,543 - EX28DRAFT_0490 0.68 -0.2 481,677 - EX28DRAFT_0490 0.75 -1.9 481,677 - EX28DRAFT_0490 0.75 -1.1 481,736 + EX28DRAFT_0490 0.78 -0.2 481,740 + EX28DRAFT_0490 0.79 -1.0 481,740 + EX28DRAFT_0490 0.79 -0.2 481,741 - EX28DRAFT_0490 0.79 -0.2 481,802 + EX28DRAFT_0490 0.82 +1.6 481,803 - EX28DRAFT_0490 0.82 +0.5 481,815 - EX28DRAFT_0490 0.83 -0.5 481,838 - EX28DRAFT_0490 0.84 -0.2 481,975 + +0.5 481,975 + +1.7 482,002 - +1.3 482,002 - -0.4 482,134 - -0.7 482,243 - +1.1 482,246 + -0.3 482,410 - EX28DRAFT_0491 0.10 +0.1 482,418 - EX28DRAFT_0491 0.11 -0.7 482,418 - EX28DRAFT_0491 0.11 +0.4 482,450 + EX28DRAFT_0491 0.13 -2.4 482,475 + EX28DRAFT_0491 0.15 +0.1 482,518 - EX28DRAFT_0491 0.17 +0.6 482,518 - EX28DRAFT_0491 0.17 +0.1 483,059 - EX28DRAFT_0491 0.51 -0.6 483,059 - EX28DRAFT_0491 0.51 -0.5 483,134 - EX28DRAFT_0491 0.56 -0.0 483,205 - EX28DRAFT_0491 0.61 -0.5 483,636 + EX28DRAFT_0491 0.88 -0.6 483,652 + EX28DRAFT_0491 0.89 +0.6 483,652 + EX28DRAFT_0491 0.89 -0.5 483,750 + -1.9 483,751 - +0.4 483,829 - -0.4 483,832 - -0.2 483,835 - -0.2 483,840 + +0.9 483,841 - -0.4 483,841 - +0.1 483,841 - +0.7 483,851 - +0.5 483,851 - +0.0 483,852 + -0.8 483,923 - +0.1 483,985 + -0.2 484,741 - EX28DRAFT_0493 0.19 -0.7 484,769 - EX28DRAFT_0493 0.22 -1.2
Or see this region's nucleotide sequence