Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0483 and EX28DRAFT_0484 overlap by 1 nucleotides EX28DRAFT_0484 and EX28DRAFT_0485 are separated by 212 nucleotides
EX28DRAFT_0483: EX28DRAFT_0483 - Cation/multidrug efflux pump, at 468,418 to 471,540
_0483
EX28DRAFT_0484: EX28DRAFT_0484 - RND family efflux transporter, MFP subunit, at 471,540 to 472,742
_0484
EX28DRAFT_0485: EX28DRAFT_0485 - Molecular chaperone, at 472,955 to 474,307
_0485
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 471.707 kb on + strand, within EX28DRAFT_0484 at 471.708 kb on - strand, within EX28DRAFT_0484 at 471.708 kb on - strand, within EX28DRAFT_0484 at 472.731 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.749 kb on - strand at 472.781 kb on - strand at 472.783 kb on + strand at 472.784 kb on - strand at 472.784 kb on - strand at 472.822 kb on - strand at 472.822 kb on - strand at 472.861 kb on + strand at 472.861 kb on + strand at 472.960 kb on + strand at 472.961 kb on - strand at 472.961 kb on - strand at 472.961 kb on - strand at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.097 kb on + strand, within EX28DRAFT_0485 at 473.227 kb on + strand, within EX28DRAFT_0485 at 473.228 kb on - strand, within EX28DRAFT_0485 at 473.290 kb on + strand, within EX28DRAFT_0485 at 473.608 kb on + strand, within EX28DRAFT_0485 at 473.666 kb on + strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485 at 473.667 kb on - strand, within EX28DRAFT_0485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 471,707 + EX28DRAFT_0484 0.14 +0.8 471,708 - EX28DRAFT_0484 0.14 +0.5 471,708 - EX28DRAFT_0484 0.14 -0.3 472,731 - +1.2 472,749 - +1.4 472,749 - +0.4 472,749 - -0.2 472,781 - -0.4 472,783 + +0.4 472,784 - +2.2 472,784 - +4.7 472,822 - +0.3 472,822 - -2.9 472,861 + +0.4 472,861 + +0.5 472,960 + +0.7 472,961 - +0.3 472,961 - +0.3 472,961 - -0.5 473,097 + EX28DRAFT_0485 0.10 -0.6 473,097 + EX28DRAFT_0485 0.10 +0.1 473,227 + EX28DRAFT_0485 0.20 -1.0 473,228 - EX28DRAFT_0485 0.20 +0.0 473,290 + EX28DRAFT_0485 0.25 -0.2 473,608 + EX28DRAFT_0485 0.48 +1.5 473,666 + EX28DRAFT_0485 0.53 +0.6 473,667 - EX28DRAFT_0485 0.53 +0.1 473,667 - EX28DRAFT_0485 0.53 -0.7 473,667 - EX28DRAFT_0485 0.53 +0.5
Or see this region's nucleotide sequence