Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0418

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0417 and EX28DRAFT_0418 are separated by 301 nucleotidesEX28DRAFT_0418 and EX28DRAFT_0419 are separated by 166 nucleotides EX28DRAFT_0417: EX28DRAFT_0417 - tRNA-dihydrouridine synthase, at 394,315 to 395,247 _0417 EX28DRAFT_0418: EX28DRAFT_0418 - Carbohydrate-selective porin, at 395,549 to 396,895 _0418 EX28DRAFT_0419: EX28DRAFT_0419 - transcriptional antiterminator, BglG family, at 397,062 to 397,895 _0419 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 394.840 kb on + strand, within EX28DRAFT_0417at 394.858 kb on - strand, within EX28DRAFT_0417at 395.024 kb on + strand, within EX28DRAFT_0417at 395.029 kb on + strand, within EX28DRAFT_0417at 395.029 kb on + strand, within EX28DRAFT_0417at 395.116 kb on + strand, within EX28DRAFT_0417at 395.117 kb on - strand, within EX28DRAFT_0417at 395.555 kb on + strandat 395.682 kb on + strandat 395.686 kb on + strand, within EX28DRAFT_0418at 395.711 kb on - strand, within EX28DRAFT_0418at 395.714 kb on + strand, within EX28DRAFT_0418at 395.714 kb on + strand, within EX28DRAFT_0418at 395.714 kb on + strand, within EX28DRAFT_0418at 395.765 kb on - strand, within EX28DRAFT_0418at 396.285 kb on + strand, within EX28DRAFT_0418at 396.286 kb on - strand, within EX28DRAFT_0418at 396.286 kb on - strand, within EX28DRAFT_0418at 396.338 kb on + strand, within EX28DRAFT_0418at 396.341 kb on - strand, within EX28DRAFT_0418at 396.384 kb on - strand, within EX28DRAFT_0418at 396.458 kb on + strand, within EX28DRAFT_0418at 396.482 kb on - strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.553 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.557 kb on + strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.558 kb on - strand, within EX28DRAFT_0418at 396.559 kb on + strand, within EX28DRAFT_0418at 396.560 kb on - strand, within EX28DRAFT_0418at 396.560 kb on - strand, within EX28DRAFT_0418at 396.653 kb on - strand, within EX28DRAFT_0418at 396.653 kb on - strand, within EX28DRAFT_0418at 396.666 kb on - strand, within EX28DRAFT_0418at 396.713 kb on + strand, within EX28DRAFT_0418at 396.714 kb on - strand, within EX28DRAFT_0418at 396.904 kb on + strandat 396.967 kb on + strandat 396.997 kb on - strandat 396.997 kb on - strandat 397.078 kb on + strandat 397.085 kb on + strandat 397.211 kb on - strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.340 kb on + strand, within EX28DRAFT_0419at 397.341 kb on - strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.425 kb on - strand, within EX28DRAFT_0419at 397.620 kb on + strand, within EX28DRAFT_0419at 397.621 kb on - strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.659 kb on + strand, within EX28DRAFT_0419at 397.764 kb on + strand, within EX28DRAFT_0419at 397.765 kb on - strand, within EX28DRAFT_0419at 397.847 kb on + strandat 397.847 kb on + strandat 397.847 kb on + strandat 397.848 kb on - strandat 397.848 kb on - strandat 397.865 kb on + strandat 397.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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394,840 + EX28DRAFT_0417 0.56 -0.1
394,858 - EX28DRAFT_0417 0.58 +4.6
395,024 + EX28DRAFT_0417 0.76 -0.1
395,029 + EX28DRAFT_0417 0.77 +0.2
395,029 + EX28DRAFT_0417 0.77 +0.3
395,116 + EX28DRAFT_0417 0.86 -0.8
395,117 - EX28DRAFT_0417 0.86 -0.1
395,555 + +0.6
395,682 + -0.2
395,686 + EX28DRAFT_0418 0.10 +0.2
395,711 - EX28DRAFT_0418 0.12 -0.2
395,714 + EX28DRAFT_0418 0.12 -0.3
395,714 + EX28DRAFT_0418 0.12 +0.5
395,714 + EX28DRAFT_0418 0.12 +2.5
395,765 - EX28DRAFT_0418 0.16 -1.0
396,285 + EX28DRAFT_0418 0.55 +1.2
396,286 - EX28DRAFT_0418 0.55 +0.7
396,286 - EX28DRAFT_0418 0.55 +0.5
396,338 + EX28DRAFT_0418 0.59 -1.4
396,341 - EX28DRAFT_0418 0.59 +0.1
396,384 - EX28DRAFT_0418 0.62 +0.6
396,458 + EX28DRAFT_0418 0.67 +0.4
396,482 - EX28DRAFT_0418 0.69 +0.6
396,553 + EX28DRAFT_0418 0.75 +0.4
396,553 + EX28DRAFT_0418 0.75 -1.2
396,553 + EX28DRAFT_0418 0.75 +1.1
396,557 + EX28DRAFT_0418 0.75 +1.1
396,557 + EX28DRAFT_0418 0.75 +0.6
396,557 + EX28DRAFT_0418 0.75 +0.0
396,557 + EX28DRAFT_0418 0.75 +0.3
396,558 - EX28DRAFT_0418 0.75 +0.9
396,558 - EX28DRAFT_0418 0.75 +0.0
396,558 - EX28DRAFT_0418 0.75 -1.7
396,558 - EX28DRAFT_0418 0.75 -0.3
396,558 - EX28DRAFT_0418 0.75 -1.3
396,558 - EX28DRAFT_0418 0.75 +0.8
396,558 - EX28DRAFT_0418 0.75 -0.2
396,559 + EX28DRAFT_0418 0.75 -1.6
396,560 - EX28DRAFT_0418 0.75 +2.3
396,560 - EX28DRAFT_0418 0.75 -0.2
396,653 - EX28DRAFT_0418 0.82 -0.5
396,653 - EX28DRAFT_0418 0.82 +0.4
396,666 - EX28DRAFT_0418 0.83 -0.6
396,713 + EX28DRAFT_0418 0.86 -0.0
396,714 - EX28DRAFT_0418 0.86 +0.4
396,904 + +0.1
396,967 + -0.3
396,997 - +0.2
396,997 - -0.3
397,078 + +1.3
397,085 + +1.0
397,211 - EX28DRAFT_0419 0.18 -0.4
397,338 + EX28DRAFT_0419 0.33 -0.1
397,338 + EX28DRAFT_0419 0.33 -0.3
397,339 - EX28DRAFT_0419 0.33 +0.3
397,339 - EX28DRAFT_0419 0.33 -0.8
397,339 - EX28DRAFT_0419 0.33 +0.4
397,340 + EX28DRAFT_0419 0.33 -1.9
397,341 - EX28DRAFT_0419 0.33 +0.3
397,362 + EX28DRAFT_0419 0.36 -0.8
397,362 + EX28DRAFT_0419 0.36 -0.5
397,425 - EX28DRAFT_0419 0.44 -2.0
397,620 + EX28DRAFT_0419 0.67 +0.3
397,621 - EX28DRAFT_0419 0.67 +0.2
397,638 + EX28DRAFT_0419 0.69 -0.4
397,638 + EX28DRAFT_0419 0.69 -1.2
397,659 + EX28DRAFT_0419 0.72 -1.3
397,764 + EX28DRAFT_0419 0.84 +0.6
397,765 - EX28DRAFT_0419 0.84 +1.0
397,847 + +0.2
397,847 + +0.4
397,847 + +0.3
397,848 - +0.3
397,848 - -1.6
397,865 + -1.3
397,866 - -1.3

Or see this region's nucleotide sequence