Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0283

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0282 and EX28DRAFT_0283 are separated by 84 nucleotidesEX28DRAFT_0283 and EX28DRAFT_0284 are separated by 113 nucleotides EX28DRAFT_0282: EX28DRAFT_0282 - Arabinose efflux permease, at 244,382 to 245,560 _0282 EX28DRAFT_0283: EX28DRAFT_0283 - hypothetical protein, at 245,645 to 246,649 _0283 EX28DRAFT_0284: EX28DRAFT_0284 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 246,763 to 247,899 _0284 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 244.709 kb on + strand, within EX28DRAFT_0282at 244.710 kb on - strand, within EX28DRAFT_0282at 244.710 kb on - strand, within EX28DRAFT_0282at 244.711 kb on + strand, within EX28DRAFT_0282at 244.717 kb on + strand, within EX28DRAFT_0282at 244.717 kb on + strand, within EX28DRAFT_0282at 244.978 kb on + strand, within EX28DRAFT_0282at 244.978 kb on + strand, within EX28DRAFT_0282at 245.105 kb on + strand, within EX28DRAFT_0282at 245.140 kb on + strand, within EX28DRAFT_0282at 245.140 kb on + strand, within EX28DRAFT_0282at 245.141 kb on - strand, within EX28DRAFT_0282at 245.141 kb on - strand, within EX28DRAFT_0282at 245.245 kb on - strand, within EX28DRAFT_0282at 245.593 kb on + strandat 245.605 kb on - strandat 245.611 kb on - strandat 245.647 kb on - strandat 245.758 kb on - strand, within EX28DRAFT_0283at 245.758 kb on - strand, within EX28DRAFT_0283at 246.088 kb on + strand, within EX28DRAFT_0283at 246.088 kb on + strand, within EX28DRAFT_0283at 246.089 kb on - strand, within EX28DRAFT_0283at 246.467 kb on + strand, within EX28DRAFT_0283at 246.468 kb on - strand, within EX28DRAFT_0283at 246.692 kb on + strandat 246.692 kb on + strandat 246.692 kb on + strandat 246.692 kb on + strandat 246.692 kb on + strandat 246.692 kb on + strandat 246.693 kb on - strandat 246.693 kb on - strandat 246.693 kb on - strandat 246.693 kb on - strandat 246.693 kb on - strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.696 kb on + strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.697 kb on - strandat 246.698 kb on + strandat 246.698 kb on + strandat 246.698 kb on + strandat 246.698 kb on + strandat 246.699 kb on - strandat 246.908 kb on + strand, within EX28DRAFT_0284at 246.908 kb on + strand, within EX28DRAFT_0284at 246.940 kb on - strand, within EX28DRAFT_0284at 247.054 kb on + strand, within EX28DRAFT_0284at 247.309 kb on + strand, within EX28DRAFT_0284at 247.309 kb on + strand, within EX28DRAFT_0284at 247.311 kb on + strand, within EX28DRAFT_0284at 247.312 kb on - strand, within EX28DRAFT_0284at 247.312 kb on - strand, within EX28DRAFT_0284at 247.312 kb on - strand, within EX28DRAFT_0284at 247.366 kb on - strand, within EX28DRAFT_0284at 247.497 kb on + strand, within EX28DRAFT_0284at 247.498 kb on - strand, within EX28DRAFT_0284at 247.560 kb on + strand, within EX28DRAFT_0284at 247.614 kb on - strand, within EX28DRAFT_0284at 247.628 kb on + strand, within EX28DRAFT_0284

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
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244,709 + EX28DRAFT_0282 0.28 -0.1
244,710 - EX28DRAFT_0282 0.28 +1.5
244,710 - EX28DRAFT_0282 0.28 +0.2
244,711 + EX28DRAFT_0282 0.28 +1.3
244,717 + EX28DRAFT_0282 0.28 +0.0
244,717 + EX28DRAFT_0282 0.28 -1.3
244,978 + EX28DRAFT_0282 0.51 -0.2
244,978 + EX28DRAFT_0282 0.51 -0.1
245,105 + EX28DRAFT_0282 0.61 +0.6
245,140 + EX28DRAFT_0282 0.64 +1.2
245,140 + EX28DRAFT_0282 0.64 +0.0
245,141 - EX28DRAFT_0282 0.64 +0.3
245,141 - EX28DRAFT_0282 0.64 +0.2
245,245 - EX28DRAFT_0282 0.73 -0.2
245,593 + -0.8
245,605 - +1.1
245,611 - -0.2
245,647 - -0.6
245,758 - EX28DRAFT_0283 0.11 +0.2
245,758 - EX28DRAFT_0283 0.11 -0.4
246,088 + EX28DRAFT_0283 0.44 -0.6
246,088 + EX28DRAFT_0283 0.44 -0.7
246,089 - EX28DRAFT_0283 0.44 -0.2
246,467 + EX28DRAFT_0283 0.82 -0.3
246,468 - EX28DRAFT_0283 0.82 +0.4
246,692 + +0.2
246,692 + +0.6
246,692 + -0.1
246,692 + -0.7
246,692 + +0.4
246,692 + -0.5
246,693 - +0.1
246,693 - +0.6
246,693 - +0.7
246,693 - -0.5
246,693 - +0.2
246,696 + +1.1
246,696 + -2.5
246,696 + -0.5
246,696 + -0.1
246,696 + +0.6
246,696 + +0.7
246,696 + -0.7
246,696 + -0.1
246,696 + +0.3
246,696 + -0.1
246,696 + +1.0
246,696 + -1.4
246,696 + +0.2
246,696 + +0.6
246,696 + +0.3
246,696 + +1.4
246,697 - +0.3
246,697 - +1.3
246,697 - +0.2
246,697 - +0.2
246,697 - +0.1
246,697 - +0.3
246,697 - +1.3
246,697 - -0.0
246,697 - +0.3
246,697 - -0.2
246,697 - +0.0
246,697 - +2.0
246,698 + -0.1
246,698 + -0.9
246,698 + -0.1
246,698 + +0.8
246,699 - -1.0
246,908 + EX28DRAFT_0284 0.13 +0.6
246,908 + EX28DRAFT_0284 0.13 +2.4
246,940 - EX28DRAFT_0284 0.16 +1.1
247,054 + EX28DRAFT_0284 0.26 -0.1
247,309 + EX28DRAFT_0284 0.48 -0.3
247,309 + EX28DRAFT_0284 0.48 -0.2
247,311 + EX28DRAFT_0284 0.48 +0.2
247,312 - EX28DRAFT_0284 0.48 -0.4
247,312 - EX28DRAFT_0284 0.48 +1.1
247,312 - EX28DRAFT_0284 0.48 -0.3
247,366 - EX28DRAFT_0284 0.53 -0.2
247,497 + EX28DRAFT_0284 0.65 +0.2
247,498 - EX28DRAFT_0284 0.65 +1.1
247,560 + EX28DRAFT_0284 0.70 -0.3
247,614 - EX28DRAFT_0284 0.75 +3.3
247,628 + EX28DRAFT_0284 0.76 +0.1

Or see this region's nucleotide sequence