Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0114 and EX28DRAFT_0115 are separated by 1 nucleotides EX28DRAFT_0115 and EX28DRAFT_0116 are separated by 1 nucleotides EX28DRAFT_0116 and EX28DRAFT_0117 are separated by 60 nucleotides EX28DRAFT_0117 and EX28DRAFT_0118 are separated by 78 nucleotides EX28DRAFT_0118 and EX28DRAFT_0119 are separated by 17 nucleotides
EX28DRAFT_0114: EX28DRAFT_0114 - Fe-S protein assembly chaperone HscA, at 52,045 to 53,895
_0114
EX28DRAFT_0115: EX28DRAFT_0115 - ferredoxin, 2Fe-2S type, ISC system, at 53,897 to 54,232
_0115
EX28DRAFT_0116: EX28DRAFT_0116 - FeS assembly protein IscX, at 54,234 to 54,434
_0116
EX28DRAFT_0117: EX28DRAFT_0117 - Leucyl aminopeptidase, at 54,495 to 55,781
_0117
EX28DRAFT_0118: EX28DRAFT_0118 - SseB protein C-terminal domain/SseB protein N-terminal domain, at 55,860 to 56,636
_0118
EX28DRAFT_0119: EX28DRAFT_0119 - transcriptional regulator, RpiR family, at 56,654 to 57,424
_0119
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 54.204 kb on - strand at 54.233 kb on + strand at 54.314 kb on - strand, within EX28DRAFT_0116 at 54.419 kb on - strand at 54.442 kb on - strand at 54.472 kb on - strand at 54.479 kb on - strand at 54.481 kb on + strand at 54.487 kb on + strand at 54.492 kb on - strand at 54.564 kb on + strand at 54.662 kb on + strand, within EX28DRAFT_0117 at 54.964 kb on - strand, within EX28DRAFT_0117 at 54.964 kb on - strand, within EX28DRAFT_0117 at 55.058 kb on - strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117 at 55.656 kb on + strand at 55.780 kb on - strand at 55.859 kb on + strand at 55.882 kb on + strand at 56.201 kb on + strand, within EX28DRAFT_0118 at 56.388 kb on - strand, within EX28DRAFT_0118 at 56.513 kb on + strand, within EX28DRAFT_0118 at 56.555 kb on + strand, within EX28DRAFT_0118
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours remove 54,204 - -1.6 54,233 + -0.4 54,314 - EX28DRAFT_0116 0.40 -0.4 54,419 - -0.4 54,442 - -0.9 54,472 - -0.1 54,479 - -0.3 54,481 + +0.4 54,487 + -1.0 54,492 - -0.5 54,564 + -0.2 54,662 + EX28DRAFT_0117 0.13 -0.2 54,964 - EX28DRAFT_0117 0.36 +0.2 54,964 - EX28DRAFT_0117 0.36 -1.8 55,058 - EX28DRAFT_0117 0.44 -0.3 55,224 + EX28DRAFT_0117 0.57 +0.3 55,224 + EX28DRAFT_0117 0.57 -1.8 55,225 - EX28DRAFT_0117 0.57 -0.6 55,225 - EX28DRAFT_0117 0.57 +0.2 55,656 + +0.2 55,780 - -1.2 55,859 + -0.3 55,882 + +0.5 56,201 + EX28DRAFT_0118 0.44 -0.6 56,388 - EX28DRAFT_0118 0.68 +0.5 56,513 + EX28DRAFT_0118 0.84 -1.1 56,555 + EX28DRAFT_0118 0.89 -0.1
Or see this region's nucleotide sequence