Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03998 and CCNA_00464 are separated by 713 nucleotides
CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800
_03998
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
Position (kb) 475
476
477 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 474.553 kb on - strand at 474.553 kb on - strand at 474.553 kb on - strand at 474.554 kb on - strand at 474.564 kb on + strand at 474.572 kb on - strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.592 kb on + strand at 474.599 kb on - strand at 474.600 kb on - strand at 474.600 kb on - strand at 474.600 kb on - strand at 474.636 kb on + strand at 474.636 kb on + strand at 474.636 kb on + strand at 474.644 kb on - strand at 474.677 kb on + strand at 474.703 kb on - strand at 474.820 kb on + strand at 474.820 kb on + strand at 474.832 kb on - strand at 474.869 kb on + strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.877 kb on - strand at 474.927 kb on + strand at 474.937 kb on + strand at 474.984 kb on - strand at 474.989 kb on - strand at 475.000 kb on + strand at 475.005 kb on + strand at 475.008 kb on - strand at 475.008 kb on - strand at 475.008 kb on - strand at 475.013 kb on - strand at 475.023 kb on - strand at 475.028 kb on - strand at 475.028 kb on - strand at 475.032 kb on + strand at 475.033 kb on - strand at 475.040 kb on + strand at 475.040 kb on + strand at 475.045 kb on + strand at 475.045 kb on + strand at 475.053 kb on - strand at 475.053 kb on - strand at 475.057 kb on + strand at 475.060 kb on - strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.067 kb on + strand at 475.070 kb on - strand at 475.075 kb on - strand at 475.078 kb on + strand at 475.084 kb on + strand at 475.121 kb on + strand at 475.143 kb on - strand at 475.145 kb on + strand at 475.164 kb on + strand at 475.212 kb on + strand at 475.227 kb on - strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.260 kb on + strand at 475.268 kb on - strand at 475.286 kb on + strand at 475.304 kb on + strand at 475.354 kb on + strand at 475.357 kb on - strand at 475.378 kb on + strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.386 kb on - strand at 475.388 kb on + strand at 475.388 kb on + strand at 475.396 kb on - strand at 475.417 kb on + strand at 475.444 kb on + strand at 475.444 kb on + strand at 475.446 kb on + strand at 475.447 kb on + strand at 475.454 kb on - strand at 475.455 kb on - strand at 475.466 kb on + strand at 475.495 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.511 kb on + strand at 475.512 kb on + strand at 475.519 kb on - strand at 475.519 kb on - strand at 475.520 kb on - strand at 475.521 kb on + strand at 475.532 kb on + strand at 475.534 kb on - strand at 475.537 kb on + strand at 475.555 kb on + strand at 475.555 kb on - strand at 475.579 kb on - strand at 475.580 kb on - strand at 475.600 kb on - strand at 475.630 kb on + strand at 475.675 kb on + strand, within CCNA_03998 at 475.676 kb on - strand, within CCNA_03998 at 475.707 kb on - strand, within CCNA_03998 at 475.774 kb on + strand, within CCNA_03998 at 475.803 kb on - strand, within CCNA_03998 at 475.832 kb on + strand, within CCNA_03998 at 475.861 kb on + strand, within CCNA_03998 at 475.878 kb on - strand, within CCNA_03998 at 475.885 kb on - strand, within CCNA_03998 at 475.900 kb on + strand, within CCNA_03998 at 475.906 kb on + strand, within CCNA_03998 at 475.919 kb on + strand, within CCNA_03998 at 475.921 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.927 kb on - strand, within CCNA_03998 at 475.934 kb on - strand, within CCNA_03998 at 475.957 kb on + strand, within CCNA_03998 at 475.965 kb on - strand, within CCNA_03998 at 476.034 kb on - strand, within CCNA_03998 at 476.115 kb on + strand, within CCNA_03998 at 476.117 kb on - strand, within CCNA_03998 at 476.142 kb on + strand, within CCNA_03998 at 476.168 kb on + strand, within CCNA_03998 at 476.183 kb on + strand, within CCNA_03998 at 476.193 kb on - strand, within CCNA_03998 at 476.203 kb on - strand, within CCNA_03998 at 476.209 kb on - strand, within CCNA_03998 at 476.212 kb on + strand, within CCNA_03998 at 476.222 kb on + strand, within CCNA_03998 at 476.234 kb on + strand, within CCNA_03998 at 476.250 kb on - strand, within CCNA_03998 at 476.257 kb on + strand, within CCNA_03998 at 476.272 kb on - strand, within CCNA_03998 at 476.298 kb on + strand, within CCNA_03998 at 476.306 kb on - strand, within CCNA_03998 at 476.319 kb on - strand, within CCNA_03998 at 476.344 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.357 kb on + strand, within CCNA_03998 at 476.365 kb on - strand, within CCNA_03998 at 476.365 kb on - strand, within CCNA_03998 at 476.378 kb on + strand, within CCNA_03998 at 476.378 kb on + strand, within CCNA_03998 at 476.380 kb on + strand, within CCNA_03998 at 476.388 kb on - strand, within CCNA_03998 at 476.415 kb on + strand, within CCNA_03998 at 476.423 kb on - strand, within CCNA_03998 at 476.430 kb on + strand, within CCNA_03998 at 476.480 kb on - strand, within CCNA_03998 at 476.492 kb on - strand, within CCNA_03998 at 476.536 kb on + strand, within CCNA_03998 at 476.552 kb on + strand, within CCNA_03998 at 476.562 kb on + strand, within CCNA_03998 at 476.567 kb on + strand, within CCNA_03998 at 476.570 kb on - strand, within CCNA_03998 at 476.580 kb on - strand, within CCNA_03998 at 476.590 kb on + strand, within CCNA_03998 at 476.603 kb on + strand, within CCNA_03998 at 476.608 kb on + strand, within CCNA_03998 at 476.609 kb on + strand, within CCNA_03998 at 476.666 kb on + strand, within CCNA_03998 at 476.674 kb on - strand at 476.676 kb on + strand at 476.707 kb on + strand at 476.732 kb on + strand at 476.735 kb on - strand at 476.740 kb on - strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.748 kb on + strand at 476.756 kb on - strand at 476.756 kb on - strand at 476.758 kb on + strand at 476.807 kb on - strand at 476.808 kb on + strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.816 kb on - strand at 476.834 kb on + strand at 476.866 kb on + strand at 476.872 kb on + strand at 476.872 kb on + strand at 476.880 kb on - strand at 476.888 kb on + strand at 476.910 kb on + strand at 476.918 kb on - strand at 477.212 kb on + strand at 477.212 kb on + strand at 477.219 kb on + strand at 477.220 kb on + strand at 477.246 kb on + strand at 477.258 kb on - strand at 477.264 kb on - strand at 477.289 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.330 kb on - strand at 477.370 kb on - strand at 477.382 kb on + strand at 477.388 kb on - strand at 477.390 kb on - strand at 477.458 kb on + strand at 477.469 kb on + strand at 477.474 kb on + strand at 477.477 kb on - strand at 477.487 kb on - strand at 477.488 kb on - strand at 477.495 kb on + strand at 477.503 kb on - strand at 477.504 kb on + strand at 477.514 kb on - strand at 477.550 kb on + strand, within CCNA_00464 at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.564 kb on - strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.619 kb on + strand, within CCNA_00464 at 477.632 kb on - strand, within CCNA_00464 at 477.673 kb on - strand at 477.684 kb on + strand at 477.684 kb on + strand at 477.692 kb on - strand at 477.729 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 474,553 - +0.4 474,553 - -0.0 474,553 - +0.1 474,554 - -0.4 474,564 + +0.0 474,572 - +0.2 474,592 + +0.5 474,592 + +2.0 474,592 + +0.3 474,599 - +0.3 474,600 - -0.3 474,600 - -0.3 474,600 - +0.4 474,636 + -0.7 474,636 + -0.2 474,636 + -1.7 474,644 - -1.4 474,677 + +0.1 474,703 - +0.2 474,820 + +0.5 474,820 + -0.7 474,832 - +0.9 474,869 + +1.3 474,877 - -0.1 474,877 - -2.2 474,877 - +0.2 474,927 + +0.1 474,937 + -0.4 474,984 - +0.0 474,989 - +1.6 475,000 + -0.3 475,005 + -0.6 475,008 - +0.2 475,008 - +0.5 475,008 - +0.4 475,013 - -0.0 475,023 - +0.9 475,028 - +0.9 475,028 - +0.5 475,032 + +0.4 475,033 - +1.3 475,040 + -0.2 475,040 + +1.4 475,045 + -0.5 475,045 + +0.3 475,053 - +0.5 475,053 - +1.1 475,057 + +0.3 475,060 - +0.5 475,067 + +0.2 475,067 + -0.2 475,067 + +0.3 475,067 + +0.5 475,067 + -0.1 475,070 - +0.3 475,075 - +1.1 475,078 + -1.0 475,084 + +0.8 475,121 + +0.6 475,143 - -0.7 475,145 + +0.4 475,164 + -0.8 475,212 + -0.4 475,227 - -0.3 475,260 + -0.5 475,260 + -0.7 475,260 + +1.3 475,268 - -0.7 475,286 + -0.8 475,304 + +0.7 475,354 + -0.0 475,357 - +0.2 475,378 + +0.4 475,386 - -1.1 475,386 - +0.3 475,386 - +0.5 475,386 - -2.5 475,388 + -0.4 475,388 + -0.4 475,396 - -0.7 475,417 + +0.2 475,444 + +0.4 475,444 + +0.6 475,446 + +0.9 475,447 + -0.2 475,454 - +0.1 475,455 - +1.2 475,466 + -0.7 475,495 + +0.2 475,511 + +1.2 475,511 + +0.4 475,511 + -0.1 475,511 + +1.5 475,512 + -0.0 475,519 - +1.8 475,519 - +0.1 475,520 - -1.3 475,521 + -0.2 475,532 + +1.5 475,534 - -0.4 475,537 + +0.2 475,555 + -0.0 475,555 - -0.1 475,579 - +0.0 475,580 - +0.6 475,600 - +1.0 475,630 + -0.4 475,675 + CCNA_03998 0.11 +0.2 475,676 - CCNA_03998 0.11 -0.3 475,707 - CCNA_03998 0.14 +1.7 475,774 + CCNA_03998 0.19 +1.7 475,803 - CCNA_03998 0.21 -0.1 475,832 + CCNA_03998 0.24 +0.7 475,861 + CCNA_03998 0.26 +0.9 475,878 - CCNA_03998 0.27 +0.3 475,885 - CCNA_03998 0.28 -1.6 475,900 + CCNA_03998 0.29 -1.3 475,906 + CCNA_03998 0.29 +1.0 475,919 + CCNA_03998 0.30 +3.1 475,921 - CCNA_03998 0.31 +1.3 475,927 - CCNA_03998 0.31 +0.1 475,927 - CCNA_03998 0.31 -1.1 475,927 - CCNA_03998 0.31 +0.2 475,927 - CCNA_03998 0.31 -0.1 475,934 - CCNA_03998 0.32 -0.3 475,957 + CCNA_03998 0.33 +0.6 475,965 - CCNA_03998 0.34 +0.6 476,034 - CCNA_03998 0.40 -0.1 476,115 + CCNA_03998 0.46 -0.2 476,117 - CCNA_03998 0.46 -0.6 476,142 + CCNA_03998 0.48 +1.0 476,168 + CCNA_03998 0.50 +1.8 476,183 + CCNA_03998 0.51 -0.9 476,193 - CCNA_03998 0.52 -0.7 476,203 - CCNA_03998 0.53 +0.6 476,209 - CCNA_03998 0.53 -0.4 476,212 + CCNA_03998 0.54 -0.1 476,222 + CCNA_03998 0.54 +0.6 476,234 + CCNA_03998 0.55 +0.6 476,250 - CCNA_03998 0.57 +1.2 476,257 + CCNA_03998 0.57 +0.4 476,272 - CCNA_03998 0.58 -0.4 476,298 + CCNA_03998 0.60 +0.8 476,306 - CCNA_03998 0.61 -0.6 476,319 - CCNA_03998 0.62 +0.7 476,344 + CCNA_03998 0.64 -0.5 476,357 + CCNA_03998 0.65 +0.3 476,357 + CCNA_03998 0.65 +0.1 476,357 + CCNA_03998 0.65 -2.6 476,365 - CCNA_03998 0.66 +0.6 476,365 - CCNA_03998 0.66 -0.5 476,378 + CCNA_03998 0.67 -1.5 476,378 + CCNA_03998 0.67 +0.4 476,380 + CCNA_03998 0.67 +0.1 476,388 - CCNA_03998 0.67 -0.0 476,415 + CCNA_03998 0.70 -0.4 476,423 - CCNA_03998 0.70 -1.2 476,430 + CCNA_03998 0.71 +1.0 476,480 - CCNA_03998 0.75 -0.5 476,492 - CCNA_03998 0.76 +0.9 476,536 + CCNA_03998 0.79 -0.1 476,552 + CCNA_03998 0.80 +1.0 476,562 + CCNA_03998 0.81 +1.0 476,567 + CCNA_03998 0.82 +0.9 476,570 - CCNA_03998 0.82 -2.0 476,580 - CCNA_03998 0.83 +1.5 476,590 + CCNA_03998 0.83 +3.2 476,603 + CCNA_03998 0.84 +0.7 476,608 + CCNA_03998 0.85 +1.1 476,609 + CCNA_03998 0.85 -0.0 476,666 + CCNA_03998 0.89 +0.8 476,674 - -0.3 476,676 + -0.2 476,707 + +0.8 476,732 + +0.7 476,735 - -1.3 476,740 - +1.3 476,748 + +0.5 476,748 + +1.4 476,748 + +1.2 476,756 - +0.4 476,756 - +1.1 476,758 + +1.7 476,807 - -0.9 476,808 + +0.1 476,816 - -0.5 476,816 - -0.2 476,816 - -2.6 476,816 - +0.6 476,834 + +2.5 476,866 + +0.7 476,872 + -0.4 476,872 + -0.3 476,880 - -1.2 476,888 + +1.6 476,910 + +0.7 476,918 - -1.6 477,212 + +0.5 477,212 + +0.4 477,219 + +0.2 477,220 + +1.0 477,246 + +1.2 477,258 - -0.2 477,264 - +0.6 477,289 + +0.1 477,297 - -1.1 477,304 + +0.6 477,304 + -0.2 477,304 + +0.3 477,304 + -2.6 477,304 + +0.5 477,304 + +0.9 477,304 + +0.6 477,304 + -0.8 477,312 - -0.1 477,312 - -0.9 477,312 - +0.1 477,312 - -1.0 477,330 - -0.5 477,370 - -1.6 477,382 + +2.7 477,388 - -1.1 477,390 - -2.9 477,458 + +0.3 477,469 + +0.7 477,474 + +0.1 477,477 - -2.5 477,487 - -1.2 477,488 - -2.5 477,495 + +0.3 477,503 - +0.2 477,504 + +0.7 477,514 - -3.2 477,550 + CCNA_00464 0.22 +0.5 477,551 + CCNA_00464 0.22 -1.0 477,556 + CCNA_00464 0.25 -0.8 477,558 - CCNA_00464 0.27 -0.4 477,558 - CCNA_00464 0.27 -2.4 477,558 - CCNA_00464 0.27 -0.5 477,558 - CCNA_00464 0.27 -1.3 477,564 - CCNA_00464 0.30 -0.9 477,574 - CCNA_00464 0.36 +0.4 477,576 + CCNA_00464 0.38 +0.0 477,584 - CCNA_00464 0.42 +0.0 477,584 - CCNA_00464 0.42 -1.1 477,619 + CCNA_00464 0.64 -0.1 477,632 - CCNA_00464 0.72 -3.8 477,673 - -1.8 477,684 + +0.4 477,684 + +0.1 477,692 - +0.1 477,729 + +1.3
Or see this region's nucleotide sequence