Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03976

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02759 and CCNA_02760 are separated by 60 nucleotidesCCNA_02760 and CCNA_03976 overlap by 1 nucleotidesCCNA_03976 and CCNA_02761 overlap by 11 nucleotidesCCNA_02761 and CCNA_02762 are separated by 205 nucleotides CCNA_02759: CCNA_02759 - methionine aminopeptidase, at 2,922,305 to 2,923,135 _02759 CCNA_02760: CCNA_02760 - hypothetical protein, at 2,923,196 to 2,923,462 _02760 CCNA_03976: CCNA_03976 - hypothetical protein, at 2,923,462 to 2,923,683 _03976 CCNA_02761: CCNA_02761 - hypothetical protein, at 2,923,673 to 2,923,918 _02761 CCNA_02762: CCNA_02762 - DNA repair protein RadC, at 2,924,124 to 2,924,789 _02762 Position (kb) 2923 2924Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2923.108 kb on + strandat 2923.116 kb on - strandat 2923.242 kb on + strand, within CCNA_02760at 2923.250 kb on - strand, within CCNA_02760at 2923.260 kb on - strand, within CCNA_02760at 2923.297 kb on + strand, within CCNA_02760at 2923.352 kb on + strand, within CCNA_02760at 2923.372 kb on + strand, within CCNA_02760at 2923.408 kb on - strand, within CCNA_02760at 2923.423 kb on + strand, within CCNA_02760at 2923.477 kb on - strandat 2923.500 kb on + strand, within CCNA_03976at 2923.563 kb on - strand, within CCNA_03976at 2923.568 kb on - strand, within CCNA_03976at 2923.684 kb on + strandat 2923.692 kb on - strandat 2923.712 kb on - strand, within CCNA_02761at 2923.712 kb on - strand, within CCNA_02761at 2923.786 kb on - strand, within CCNA_02761at 2923.791 kb on - strand, within CCNA_02761at 2923.834 kb on + strand, within CCNA_02761at 2923.851 kb on + strand, within CCNA_02761at 2923.856 kb on + strand, within CCNA_02761at 2923.864 kb on - strand, within CCNA_02761at 2923.885 kb on + strand, within CCNA_02761at 2923.907 kb on - strandat 2923.912 kb on - strandat 2923.968 kb on - strandat 2923.995 kb on + strandat 2924.005 kb on - strandat 2924.108 kb on - strandat 2924.134 kb on - strandat 2924.188 kb on - strandat 2924.193 kb on + strand, within CCNA_02762at 2924.238 kb on - strand, within CCNA_02762at 2924.238 kb on - strand, within CCNA_02762at 2924.243 kb on - strand, within CCNA_02762at 2924.248 kb on + strand, within CCNA_02762at 2924.276 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.299 kb on + strand, within CCNA_02762at 2924.307 kb on - strand, within CCNA_02762at 2924.307 kb on - strand, within CCNA_02762at 2924.307 kb on - strand, within CCNA_02762at 2924.324 kb on + strand, within CCNA_02762at 2924.324 kb on + strand, within CCNA_02762at 2924.332 kb on - strand, within CCNA_02762at 2924.360 kb on + strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.368 kb on - strand, within CCNA_02762at 2924.380 kb on - strand, within CCNA_02762at 2924.393 kb on + strand, within CCNA_02762at 2924.423 kb on + strand, within CCNA_02762at 2924.429 kb on - strand, within CCNA_02762at 2924.431 kb on - strand, within CCNA_02762at 2924.441 kb on - strand, within CCNA_02762at 2924.533 kb on + strand, within CCNA_02762at 2924.540 kb on - strand, within CCNA_02762at 2924.547 kb on + strand, within CCNA_02762at 2924.547 kb on + strand, within CCNA_02762at 2924.547 kb on + strand, within CCNA_02762at 2924.547 kb on + strand, within CCNA_02762at 2924.547 kb on + strand, within CCNA_02762at 2924.555 kb on - strand, within CCNA_02762at 2924.555 kb on - strand, within CCNA_02762at 2924.555 kb on - strand, within CCNA_02762at 2924.555 kb on - strand, within CCNA_02762at 2924.555 kb on - strand, within CCNA_02762at 2924.573 kb on + strand, within CCNA_02762at 2924.581 kb on - strand, within CCNA_02762at 2924.594 kb on + strand, within CCNA_02762at 2924.597 kb on - strand, within CCNA_02762at 2924.602 kb on - strand, within CCNA_02762at 2924.609 kb on - strand, within CCNA_02762at 2924.643 kb on + strand, within CCNA_02762at 2924.643 kb on + strand, within CCNA_02762at 2924.643 kb on + strand, within CCNA_02762at 2924.643 kb on + strand, within CCNA_02762at 2924.651 kb on - strand, within CCNA_02762at 2924.651 kb on - strand, within CCNA_02762at 2924.651 kb on - strand, within CCNA_02762

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,923,108 + -1.2
2,923,116 - -0.0
2,923,242 + CCNA_02760 0.17 +0.8
2,923,250 - CCNA_02760 0.20 -1.1
2,923,260 - CCNA_02760 0.24 -1.6
2,923,297 + CCNA_02760 0.38 +0.1
2,923,352 + CCNA_02760 0.58 -0.3
2,923,372 + CCNA_02760 0.66 +0.6
2,923,408 - CCNA_02760 0.79 -0.1
2,923,423 + CCNA_02760 0.85 +0.2
2,923,477 - +2.7
2,923,500 + CCNA_03976 0.17 +0.2
2,923,563 - CCNA_03976 0.45 -1.7
2,923,568 - CCNA_03976 0.48 -0.8
2,923,684 + +0.8
2,923,692 - +0.3
2,923,712 - CCNA_02761 0.16 -0.6
2,923,712 - CCNA_02761 0.16 -1.3
2,923,786 - CCNA_02761 0.46 +1.9
2,923,791 - CCNA_02761 0.48 +1.5
2,923,834 + CCNA_02761 0.65 +0.8
2,923,851 + CCNA_02761 0.72 -0.3
2,923,856 + CCNA_02761 0.74 +0.0
2,923,864 - CCNA_02761 0.78 -0.7
2,923,885 + CCNA_02761 0.86 +0.0
2,923,907 - -0.7
2,923,912 - +0.3
2,923,968 - -0.6
2,923,995 + +2.3
2,924,005 - +0.1
2,924,108 - +0.3
2,924,134 - +1.6
2,924,188 - -0.0
2,924,193 + CCNA_02762 0.10 -0.5
2,924,238 - CCNA_02762 0.17 +0.2
2,924,238 - CCNA_02762 0.17 +0.3
2,924,243 - CCNA_02762 0.18 +0.4
2,924,248 + CCNA_02762 0.19 -0.3
2,924,276 + CCNA_02762 0.23 -0.1
2,924,299 + CCNA_02762 0.26 +1.0
2,924,299 + CCNA_02762 0.26 +0.3
2,924,299 + CCNA_02762 0.26 -0.3
2,924,299 + CCNA_02762 0.26 -1.0
2,924,299 + CCNA_02762 0.26 -0.2
2,924,307 - CCNA_02762 0.27 +0.1
2,924,307 - CCNA_02762 0.27 -0.1
2,924,307 - CCNA_02762 0.27 +0.5
2,924,324 + CCNA_02762 0.30 +0.9
2,924,324 + CCNA_02762 0.30 +4.1
2,924,332 - CCNA_02762 0.31 +1.8
2,924,360 + CCNA_02762 0.35 -2.5
2,924,368 - CCNA_02762 0.37 +0.2
2,924,368 - CCNA_02762 0.37 -1.2
2,924,380 - CCNA_02762 0.38 -2.6
2,924,393 + CCNA_02762 0.40 -3.4
2,924,423 + CCNA_02762 0.45 +0.0
2,924,429 - CCNA_02762 0.46 +0.4
2,924,431 - CCNA_02762 0.46 +0.7
2,924,441 - CCNA_02762 0.48 +1.3
2,924,533 + CCNA_02762 0.61 +1.0
2,924,540 - CCNA_02762 0.62 -0.5
2,924,547 + CCNA_02762 0.64 -1.5
2,924,547 + CCNA_02762 0.64 -0.1
2,924,547 + CCNA_02762 0.64 +0.6
2,924,547 + CCNA_02762 0.64 +0.3
2,924,547 + CCNA_02762 0.64 -0.6
2,924,555 - CCNA_02762 0.65 -0.9
2,924,555 - CCNA_02762 0.65 +0.3
2,924,555 - CCNA_02762 0.65 -1.9
2,924,555 - CCNA_02762 0.65 -0.4
2,924,555 - CCNA_02762 0.65 -0.0
2,924,573 + CCNA_02762 0.67 +0.5
2,924,581 - CCNA_02762 0.69 +0.4
2,924,594 + CCNA_02762 0.71 +0.1
2,924,597 - CCNA_02762 0.71 +0.5
2,924,602 - CCNA_02762 0.72 -0.5
2,924,609 - CCNA_02762 0.73 +0.1
2,924,643 + CCNA_02762 0.78 -0.3
2,924,643 + CCNA_02762 0.78 +1.1
2,924,643 + CCNA_02762 0.78 -0.6
2,924,643 + CCNA_02762 0.78 -0.9
2,924,651 - CCNA_02762 0.79 +0.5
2,924,651 - CCNA_02762 0.79 +0.4
2,924,651 - CCNA_02762 0.79 -1.5

Or see this region's nucleotide sequence