Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03834 and CCNA_03835 are separated by 12 nucleotides CCNA_03835 and CCNA_03836 are separated by 70 nucleotides CCNA_03836 and CCNA_03837 are separated by 70 nucleotides
CCNA_03834: CCNA_03834 - tetratricopeptide repeat family protein, at 3,998,875 to 4,000,665
_03834
CCNA_03835: CCNA_03835 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 4,000,678 to 4,001,889
_03835
CCNA_03836: CCNA_03836 - 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase, at 4,001,960 to 4,002,472
_03836
CCNA_03837: CCNA_03837 - bacterial SH3 domain protein, at 4,002,543 to 4,003,088
_03837
Position (kb)
4000
4001
4002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3999.691 kb on + strand, within CCNA_03834 at 3999.767 kb on + strand, within CCNA_03834 at 3999.817 kb on - strand, within CCNA_03834 at 3999.837 kb on - strand, within CCNA_03834 at 3999.847 kb on + strand, within CCNA_03834 at 3999.854 kb on + strand, within CCNA_03834 at 3999.855 kb on - strand, within CCNA_03834 at 3999.855 kb on - strand, within CCNA_03834 at 3999.900 kb on + strand, within CCNA_03834 at 3999.920 kb on + strand, within CCNA_03834 at 3999.976 kb on - strand, within CCNA_03834 at 3999.995 kb on + strand, within CCNA_03834 at 3999.995 kb on - strand, within CCNA_03834 at 3999.995 kb on - strand, within CCNA_03834 at 4000.002 kb on + strand, within CCNA_03834 at 4000.008 kb on + strand, within CCNA_03834 at 4000.022 kb on + strand, within CCNA_03834 at 4000.025 kb on - strand, within CCNA_03834 at 4000.073 kb on - strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.076 kb on + strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.084 kb on - strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.090 kb on + strand, within CCNA_03834 at 4000.097 kb on + strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.098 kb on - strand, within CCNA_03834 at 4000.120 kb on + strand, within CCNA_03834 at 4000.129 kb on - strand, within CCNA_03834 at 4000.144 kb on - strand, within CCNA_03834 at 4000.146 kb on + strand, within CCNA_03834 at 4000.146 kb on + strand, within CCNA_03834 at 4000.183 kb on - strand, within CCNA_03834 at 4000.195 kb on - strand, within CCNA_03834 at 4000.213 kb on - strand, within CCNA_03834 at 4000.239 kb on - strand, within CCNA_03834 at 4000.248 kb on + strand, within CCNA_03834 at 4000.286 kb on + strand, within CCNA_03834 at 4000.291 kb on + strand, within CCNA_03834 at 4000.349 kb on + strand, within CCNA_03834 at 4000.423 kb on + strand, within CCNA_03834 at 4000.423 kb on + strand, within CCNA_03834 at 4000.426 kb on - strand, within CCNA_03834 at 4000.432 kb on + strand, within CCNA_03834 at 4000.440 kb on - strand, within CCNA_03834 at 4000.453 kb on - strand, within CCNA_03834 at 4000.461 kb on + strand, within CCNA_03834 at 4000.483 kb on - strand, within CCNA_03834 at 4000.483 kb on - strand, within CCNA_03834 at 4000.484 kb on - strand, within CCNA_03834 at 4000.491 kb on - strand at 4000.491 kb on - strand at 4000.530 kb on + strand at 4000.530 kb on + strand at 4000.538 kb on - strand at 4000.552 kb on - strand at 4000.570 kb on + strand at 4000.578 kb on - strand at 4000.585 kb on + strand at 4000.609 kb on + strand at 4000.636 kb on - strand at 4000.647 kb on - strand at 4000.804 kb on - strand, within CCNA_03835 at 4000.819 kb on - strand, within CCNA_03835 at 4000.994 kb on - strand, within CCNA_03835 at 4001.127 kb on - strand, within CCNA_03835 at 4001.132 kb on + strand, within CCNA_03835 at 4001.250 kb on - strand, within CCNA_03835 at 4001.266 kb on - strand, within CCNA_03835 at 4001.314 kb on + strand, within CCNA_03835 at 4001.330 kb on - strand, within CCNA_03835 at 4001.486 kb on + strand, within CCNA_03835 at 4001.494 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.673 kb on - strand, within CCNA_03835 at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.934 kb on + strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.942 kb on - strand at 4001.958 kb on + strand at 4002.459 kb on + strand at 4002.482 kb on - strand at 4002.509 kb on + strand at 4002.511 kb on - strand at 4002.540 kb on + strand at 4002.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,999,691 + CCNA_03834 0.46 +0.8 3,999,767 + CCNA_03834 0.50 +0.1 3,999,817 - CCNA_03834 0.53 +0.3 3,999,837 - CCNA_03834 0.54 +0.1 3,999,847 + CCNA_03834 0.54 +0.0 3,999,854 + CCNA_03834 0.55 -1.2 3,999,855 - CCNA_03834 0.55 -0.3 3,999,855 - CCNA_03834 0.55 +0.1 3,999,900 + CCNA_03834 0.57 -0.5 3,999,920 + CCNA_03834 0.58 +1.3 3,999,976 - CCNA_03834 0.61 +0.0 3,999,995 + CCNA_03834 0.63 +1.8 3,999,995 - CCNA_03834 0.63 -0.4 3,999,995 - CCNA_03834 0.63 +2.0 4,000,002 + CCNA_03834 0.63 -0.5 4,000,008 + CCNA_03834 0.63 +2.0 4,000,022 + CCNA_03834 0.64 +1.5 4,000,025 - CCNA_03834 0.64 +0.2 4,000,073 - CCNA_03834 0.67 +3.0 4,000,076 + CCNA_03834 0.67 +0.7 4,000,076 + CCNA_03834 0.67 +1.1 4,000,084 - CCNA_03834 0.68 +0.6 4,000,084 - CCNA_03834 0.68 +1.9 4,000,084 - CCNA_03834 0.68 -0.5 4,000,084 - CCNA_03834 0.68 +0.4 4,000,084 - CCNA_03834 0.68 +0.3 4,000,090 + CCNA_03834 0.68 +0.6 4,000,090 + CCNA_03834 0.68 -0.5 4,000,097 + CCNA_03834 0.68 +0.5 4,000,098 - CCNA_03834 0.68 +0.3 4,000,098 - CCNA_03834 0.68 +0.4 4,000,120 + CCNA_03834 0.70 +0.3 4,000,129 - CCNA_03834 0.70 +0.3 4,000,144 - CCNA_03834 0.71 +0.6 4,000,146 + CCNA_03834 0.71 -0.3 4,000,146 + CCNA_03834 0.71 -0.4 4,000,183 - CCNA_03834 0.73 +0.0 4,000,195 - CCNA_03834 0.74 +0.4 4,000,213 - CCNA_03834 0.75 +0.4 4,000,239 - CCNA_03834 0.76 +0.7 4,000,248 + CCNA_03834 0.77 +0.5 4,000,286 + CCNA_03834 0.79 -1.9 4,000,291 + CCNA_03834 0.79 +0.9 4,000,349 + CCNA_03834 0.82 -0.9 4,000,423 + CCNA_03834 0.86 -2.5 4,000,423 + CCNA_03834 0.86 -0.9 4,000,426 - CCNA_03834 0.87 -0.3 4,000,432 + CCNA_03834 0.87 +0.2 4,000,440 - CCNA_03834 0.87 +0.0 4,000,453 - CCNA_03834 0.88 -0.0 4,000,461 + CCNA_03834 0.89 +0.4 4,000,483 - CCNA_03834 0.90 +0.4 4,000,483 - CCNA_03834 0.90 +0.5 4,000,484 - CCNA_03834 0.90 -0.5 4,000,491 - -2.8 4,000,491 - +0.0 4,000,530 + +0.1 4,000,530 + +0.3 4,000,538 - +1.7 4,000,552 - -1.3 4,000,570 + +0.0 4,000,578 - +0.2 4,000,585 + +0.4 4,000,609 + +0.7 4,000,636 - -0.1 4,000,647 - -0.0 4,000,804 - CCNA_03835 0.10 -0.2 4,000,819 - CCNA_03835 0.12 -1.0 4,000,994 - CCNA_03835 0.26 -0.2 4,001,127 - CCNA_03835 0.37 +0.3 4,001,132 + CCNA_03835 0.37 +0.8 4,001,250 - CCNA_03835 0.47 +0.8 4,001,266 - CCNA_03835 0.49 +0.3 4,001,314 + CCNA_03835 0.52 +1.8 4,001,330 - CCNA_03835 0.54 +1.4 4,001,486 + CCNA_03835 0.67 +0.0 4,001,494 - CCNA_03835 0.67 +0.3 4,001,673 - CCNA_03835 0.82 +0.3 4,001,673 - CCNA_03835 0.82 +0.5 4,001,934 + -0.5 4,001,934 + +0.3 4,001,934 + +0.0 4,001,934 + -2.7 4,001,934 + -1.1 4,001,934 + -1.2 4,001,934 + -0.2 4,001,942 - +0.8 4,001,942 - -0.3 4,001,942 - +0.8 4,001,942 - -0.6 4,001,942 - +0.9 4,001,942 - +0.1 4,001,958 + -1.4 4,002,459 + -0.3 4,002,482 - -0.9 4,002,509 + +0.3 4,002,511 - -1.2 4,002,540 + -2.5 4,002,548 - +1.6
Or see this region's nucleotide sequence