Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03778 and CCNA_03779 are separated by 84 nucleotides CCNA_03779 and CCNA_03780 are separated by 528 nucleotides CCNA_03780 and CCNA_03781 are separated by 170 nucleotides
CCNA_03778: CCNA_03778 - integral membrane protein, at 3,944,717 to 3,945,469
_03778
CCNA_03779: CCNA_03779 - hypothetical protein, at 3,945,554 to 3,945,886
_03779
CCNA_03780: CCNA_03780 - conserved hypothetical secreted protein, at 3,946,415 to 3,947,149
_03780
CCNA_03781: CCNA_03781 - aconitate hydratase, at 3,947,320 to 3,950,007
_03781
Position (kb)
3946
3947
3948 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3945.417 kb on + strand at 3945.469 kb on + strand at 3945.477 kb on - strand at 3945.504 kb on + strand at 3945.597 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.607 kb on + strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.615 kb on - strand, within CCNA_03779 at 3945.640 kb on + strand, within CCNA_03779 at 3945.666 kb on - strand, within CCNA_03779 at 3945.671 kb on + strand, within CCNA_03779 at 3945.696 kb on + strand, within CCNA_03779 at 3945.696 kb on + strand, within CCNA_03779 at 3945.860 kb on - strand at 3945.862 kb on - strand at 3945.867 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on + strand at 3945.875 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.883 kb on - strand at 3945.913 kb on + strand at 3945.917 kb on + strand at 3946.042 kb on - strand at 3946.052 kb on - strand at 3946.075 kb on - strand at 3946.089 kb on + strand at 3946.127 kb on - strand at 3946.127 kb on - strand at 3946.127 kb on - strand at 3946.144 kb on - strand at 3946.234 kb on + strand at 3946.277 kb on + strand at 3946.277 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.298 kb on + strand at 3946.300 kb on - strand at 3946.306 kb on - strand at 3946.312 kb on + strand at 3946.319 kb on - strand at 3946.358 kb on + strand at 3946.385 kb on - strand at 3946.426 kb on - strand at 3946.429 kb on + strand at 3947.147 kb on - strand at 3947.156 kb on + strand at 3947.194 kb on + strand at 3947.202 kb on - strand at 3947.207 kb on - strand at 3947.326 kb on - strand at 3947.327 kb on + strand at 3947.327 kb on + strand at 3947.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 3,945,417 + -0.0 3,945,469 + -1.1 3,945,477 - -0.3 3,945,504 + -0.2 3,945,597 + CCNA_03779 0.13 +0.8 3,945,607 + CCNA_03779 0.16 +0.3 3,945,607 + CCNA_03779 0.16 +0.4 3,945,607 + CCNA_03779 0.16 -0.2 3,945,615 - CCNA_03779 0.18 +0.2 3,945,615 - CCNA_03779 0.18 +1.4 3,945,640 + CCNA_03779 0.26 +0.5 3,945,666 - CCNA_03779 0.34 -0.5 3,945,671 + CCNA_03779 0.35 +0.3 3,945,696 + CCNA_03779 0.43 +1.1 3,945,696 + CCNA_03779 0.43 -0.0 3,945,860 - +0.6 3,945,862 - +0.5 3,945,867 + -0.2 3,945,875 + -0.5 3,945,875 + +0.4 3,945,875 + -0.3 3,945,875 + -0.9 3,945,875 - -0.5 3,945,883 - +0.2 3,945,883 - -2.8 3,945,883 - +0.1 3,945,883 - +2.2 3,945,883 - +0.5 3,945,913 + -0.1 3,945,917 + -0.3 3,946,042 - +1.4 3,946,052 - -1.1 3,946,075 - -2.2 3,946,089 + +0.0 3,946,127 - -0.9 3,946,127 - +0.1 3,946,127 - +0.5 3,946,144 - -0.1 3,946,234 + -0.2 3,946,277 + +0.8 3,946,277 + -0.2 3,946,298 + -0.8 3,946,298 + +0.5 3,946,298 + -0.2 3,946,298 + +0.0 3,946,300 - +0.3 3,946,306 - +0.6 3,946,312 + +0.4 3,946,319 - +0.4 3,946,358 + +0.0 3,946,385 - -0.0 3,946,426 - -0.7 3,946,429 + -0.4 3,947,147 - +0.4 3,947,156 + +1.4 3,947,194 + +0.4 3,947,202 - -0.1 3,947,207 - +0.3 3,947,326 - +0.4 3,947,327 + +0.5 3,947,327 + +0.6 3,947,356 - +0.4
Or see this region's nucleotide sequence