Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02783 and CCNA_02784 overlap by 35 nucleotides CCNA_02784 and CCNA_02785 are separated by 10 nucleotides CCNA_02785 and CCNA_02786 are separated by 0 nucleotides
CCNA_02783: CCNA_02783 - two-component response regulator, at 2,940,765 to 2,942,291
_02783
CCNA_02784: CCNA_02784 - hypothetical protein, at 2,942,257 to 2,943,096
_02784
CCNA_02785: CCNA_02785 - TIR-like nucleotide binding protein, at 2,943,107 to 2,944,021
_02785
CCNA_02786: CCNA_02786 - guanylate cyclase, at 2,944,022 to 2,944,723
_02786
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2941.293 kb on - strand, within CCNA_02783 at 2941.297 kb on - strand, within CCNA_02783 at 2941.322 kb on + strand, within CCNA_02783 at 2941.347 kb on + strand, within CCNA_02783 at 2941.392 kb on - strand, within CCNA_02783 at 2941.392 kb on - strand, within CCNA_02783 at 2941.414 kb on - strand, within CCNA_02783 at 2941.415 kb on - strand, within CCNA_02783 at 2941.419 kb on - strand, within CCNA_02783 at 2941.419 kb on - strand, within CCNA_02783 at 2941.426 kb on - strand, within CCNA_02783 at 2941.426 kb on - strand, within CCNA_02783 at 2941.431 kb on - strand, within CCNA_02783 at 2941.448 kb on + strand, within CCNA_02783 at 2941.456 kb on - strand, within CCNA_02783 at 2941.456 kb on - strand, within CCNA_02783 at 2941.456 kb on - strand, within CCNA_02783 at 2941.459 kb on + strand, within CCNA_02783 at 2941.485 kb on + strand, within CCNA_02783 at 2941.511 kb on - strand, within CCNA_02783 at 2941.559 kb on + strand, within CCNA_02783 at 2941.562 kb on - strand, within CCNA_02783 at 2941.564 kb on + strand, within CCNA_02783 at 2941.587 kb on - strand, within CCNA_02783 at 2941.587 kb on - strand, within CCNA_02783 at 2941.614 kb on + strand, within CCNA_02783 at 2941.621 kb on - strand, within CCNA_02783 at 2941.624 kb on + strand, within CCNA_02783 at 2941.632 kb on - strand, within CCNA_02783 at 2941.637 kb on - strand, within CCNA_02783 at 2941.664 kb on + strand, within CCNA_02783 at 2941.664 kb on - strand, within CCNA_02783 at 2941.665 kb on + strand, within CCNA_02783 at 2941.685 kb on - strand, within CCNA_02783 at 2941.727 kb on + strand, within CCNA_02783 at 2941.735 kb on - strand, within CCNA_02783 at 2941.748 kb on - strand, within CCNA_02783 at 2941.797 kb on - strand, within CCNA_02783 at 2941.804 kb on + strand, within CCNA_02783 at 2941.804 kb on + strand, within CCNA_02783 at 2941.804 kb on + strand, within CCNA_02783 at 2941.804 kb on + strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.812 kb on - strand, within CCNA_02783 at 2941.845 kb on + strand, within CCNA_02783 at 2941.860 kb on + strand, within CCNA_02783 at 2941.863 kb on + strand, within CCNA_02783 at 2941.873 kb on + strand, within CCNA_02783 at 2941.956 kb on + strand, within CCNA_02783 at 2941.981 kb on - strand, within CCNA_02783 at 2941.992 kb on + strand, within CCNA_02783 at 2942.005 kb on - strand, within CCNA_02783 at 2942.026 kb on + strand, within CCNA_02783 at 2942.037 kb on + strand, within CCNA_02783 at 2942.045 kb on - strand, within CCNA_02783 at 2942.080 kb on + strand, within CCNA_02783 at 2942.088 kb on - strand, within CCNA_02783 at 2942.184 kb on + strand at 2942.192 kb on - strand at 2942.194 kb on + strand at 2942.195 kb on + strand at 2942.195 kb on + strand at 2942.203 kb on - strand at 2942.225 kb on - strand at 2942.225 kb on - strand at 2942.243 kb on + strand at 2942.251 kb on - strand at 2942.251 kb on - strand at 2942.251 kb on - strand at 2942.264 kb on + strand at 2942.264 kb on + strand at 2942.277 kb on - strand at 2942.283 kb on - strand at 2942.355 kb on + strand, within CCNA_02784 at 2942.393 kb on - strand, within CCNA_02784 at 2942.402 kb on + strand, within CCNA_02784 at 2942.406 kb on + strand, within CCNA_02784 at 2942.427 kb on - strand, within CCNA_02784 at 2942.436 kb on + strand, within CCNA_02784 at 2942.440 kb on - strand, within CCNA_02784 at 2942.447 kb on + strand, within CCNA_02784 at 2942.487 kb on + strand, within CCNA_02784 at 2942.492 kb on + strand, within CCNA_02784 at 2942.495 kb on - strand, within CCNA_02784 at 2942.495 kb on - strand, within CCNA_02784 at 2942.687 kb on + strand, within CCNA_02784 at 2942.700 kb on - strand, within CCNA_02784 at 2942.714 kb on + strand, within CCNA_02784 at 2942.717 kb on - strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.763 kb on + strand, within CCNA_02784 at 2942.771 kb on - strand, within CCNA_02784 at 2942.806 kb on - strand, within CCNA_02784 at 2942.826 kb on + strand, within CCNA_02784 at 2942.835 kb on + strand, within CCNA_02784 at 2942.848 kb on - strand, within CCNA_02784 at 2942.848 kb on - strand, within CCNA_02784 at 2942.853 kb on + strand, within CCNA_02784 at 2942.855 kb on - strand, within CCNA_02784 at 2942.888 kb on + strand, within CCNA_02784 at 2942.888 kb on + strand, within CCNA_02784 at 2942.888 kb on + strand, within CCNA_02784 at 2942.959 kb on + strand, within CCNA_02784 at 2942.989 kb on + strand, within CCNA_02784 at 2942.989 kb on + strand, within CCNA_02784 at 2942.997 kb on - strand, within CCNA_02784 at 2943.020 kb on + strand at 2943.039 kb on + strand at 2943.061 kb on - strand at 2943.061 kb on - strand at 2943.061 kb on - strand at 2943.081 kb on + strand at 2943.098 kb on + strand at 2943.098 kb on + strand at 2943.099 kb on + strand at 2943.117 kb on - strand at 2943.122 kb on - strand at 2943.135 kb on + strand at 2943.156 kb on - strand at 2943.158 kb on + strand at 2943.158 kb on + strand at 2943.158 kb on + strand at 2943.158 kb on + strand at 2943.166 kb on - strand at 2943.166 kb on - strand at 2943.166 kb on - strand at 2943.175 kb on + strand at 2943.183 kb on - strand at 2943.183 kb on - strand at 2943.186 kb on + strand at 2943.196 kb on + strand at 2943.197 kb on + strand at 2943.210 kb on - strand, within CCNA_02785 at 2943.232 kb on + strand, within CCNA_02785 at 2943.240 kb on - strand, within CCNA_02785 at 2943.242 kb on + strand, within CCNA_02785 at 2943.253 kb on + strand, within CCNA_02785 at 2943.270 kb on - strand, within CCNA_02785 at 2943.280 kb on + strand, within CCNA_02785 at 2943.329 kb on + strand, within CCNA_02785 at 2943.337 kb on - strand, within CCNA_02785 at 2943.353 kb on + strand, within CCNA_02785 at 2943.376 kb on + strand, within CCNA_02785 at 2943.422 kb on - strand, within CCNA_02785 at 2943.440 kb on - strand, within CCNA_02785 at 2943.464 kb on - strand, within CCNA_02785 at 2943.485 kb on - strand, within CCNA_02785 at 2943.494 kb on - strand, within CCNA_02785 at 2943.524 kb on - strand, within CCNA_02785 at 2943.543 kb on + strand, within CCNA_02785 at 2943.551 kb on - strand, within CCNA_02785 at 2943.561 kb on - strand, within CCNA_02785 at 2943.623 kb on + strand, within CCNA_02785 at 2943.623 kb on + strand, within CCNA_02785 at 2943.623 kb on + strand, within CCNA_02785 at 2943.623 kb on + strand, within CCNA_02785 at 2943.631 kb on - strand, within CCNA_02785 at 2943.638 kb on - strand, within CCNA_02785 at 2943.639 kb on + strand, within CCNA_02785 at 2943.647 kb on + strand, within CCNA_02785 at 2943.652 kb on + strand, within CCNA_02785 at 2943.652 kb on + strand, within CCNA_02785 at 2943.660 kb on - strand, within CCNA_02785 at 2943.670 kb on + strand, within CCNA_02785 at 2943.689 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.746 kb on + strand, within CCNA_02785 at 2943.760 kb on + strand, within CCNA_02785 at 2943.760 kb on + strand, within CCNA_02785 at 2943.783 kb on + strand, within CCNA_02785 at 2943.791 kb on - strand, within CCNA_02785 at 2943.791 kb on - strand, within CCNA_02785 at 2943.791 kb on - strand, within CCNA_02785 at 2943.816 kb on - strand, within CCNA_02785 at 2943.823 kb on + strand, within CCNA_02785 at 2943.831 kb on - strand, within CCNA_02785 at 2943.831 kb on - strand, within CCNA_02785 at 2943.847 kb on - strand, within CCNA_02785 at 2943.847 kb on - strand, within CCNA_02785 at 2943.858 kb on + strand, within CCNA_02785 at 2943.866 kb on - strand, within CCNA_02785 at 2943.866 kb on - strand, within CCNA_02785 at 2943.881 kb on + strand, within CCNA_02785 at 2943.887 kb on - strand, within CCNA_02785 at 2943.980 kb on - strand at 2944.005 kb on + strand at 2944.005 kb on + strand at 2944.046 kb on - strand at 2944.050 kb on + strand at 2944.055 kb on + strand at 2944.073 kb on + strand at 2944.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,941,293 - CCNA_02783 0.35 -0.4 2,941,297 - CCNA_02783 0.35 -0.1 2,941,322 + CCNA_02783 0.36 -0.5 2,941,347 + CCNA_02783 0.38 +0.1 2,941,392 - CCNA_02783 0.41 +2.3 2,941,392 - CCNA_02783 0.41 -0.2 2,941,414 - CCNA_02783 0.43 -1.4 2,941,415 - CCNA_02783 0.43 -0.9 2,941,419 - CCNA_02783 0.43 +1.6 2,941,419 - CCNA_02783 0.43 -0.5 2,941,426 - CCNA_02783 0.43 +2.4 2,941,426 - CCNA_02783 0.43 +0.1 2,941,431 - CCNA_02783 0.44 +0.5 2,941,448 + CCNA_02783 0.45 +0.0 2,941,456 - CCNA_02783 0.45 -0.1 2,941,456 - CCNA_02783 0.45 +0.3 2,941,456 - CCNA_02783 0.45 -0.4 2,941,459 + CCNA_02783 0.45 -0.6 2,941,485 + CCNA_02783 0.47 -0.0 2,941,511 - CCNA_02783 0.49 -1.2 2,941,559 + CCNA_02783 0.52 -0.1 2,941,562 - CCNA_02783 0.52 -1.6 2,941,564 + CCNA_02783 0.52 -0.3 2,941,587 - CCNA_02783 0.54 -2.0 2,941,587 - CCNA_02783 0.54 -2.0 2,941,614 + CCNA_02783 0.56 +0.9 2,941,621 - CCNA_02783 0.56 +1.0 2,941,624 + CCNA_02783 0.56 +2.1 2,941,632 - CCNA_02783 0.57 -0.3 2,941,637 - CCNA_02783 0.57 -0.9 2,941,664 + CCNA_02783 0.59 -2.3 2,941,664 - CCNA_02783 0.59 -0.4 2,941,665 + CCNA_02783 0.59 -1.4 2,941,685 - CCNA_02783 0.60 +1.7 2,941,727 + CCNA_02783 0.63 -0.7 2,941,735 - CCNA_02783 0.64 +0.8 2,941,748 - CCNA_02783 0.64 +0.8 2,941,797 - CCNA_02783 0.68 -0.8 2,941,804 + CCNA_02783 0.68 -0.9 2,941,804 + CCNA_02783 0.68 +0.7 2,941,804 + CCNA_02783 0.68 +0.9 2,941,804 + CCNA_02783 0.68 -0.4 2,941,812 - CCNA_02783 0.69 -0.5 2,941,812 - CCNA_02783 0.69 -1.1 2,941,812 - CCNA_02783 0.69 +1.3 2,941,812 - CCNA_02783 0.69 +0.2 2,941,812 - CCNA_02783 0.69 +0.3 2,941,812 - CCNA_02783 0.69 -0.7 2,941,845 + CCNA_02783 0.71 +0.4 2,941,860 + CCNA_02783 0.72 -0.6 2,941,863 + CCNA_02783 0.72 +0.6 2,941,873 + CCNA_02783 0.73 +0.0 2,941,956 + CCNA_02783 0.78 -0.3 2,941,981 - CCNA_02783 0.80 +0.8 2,941,992 + CCNA_02783 0.80 +0.6 2,942,005 - CCNA_02783 0.81 +0.5 2,942,026 + CCNA_02783 0.83 +0.9 2,942,037 + CCNA_02783 0.83 -0.3 2,942,045 - CCNA_02783 0.84 +0.9 2,942,080 + CCNA_02783 0.86 -0.8 2,942,088 - CCNA_02783 0.87 -0.6 2,942,184 + -1.8 2,942,192 - -0.0 2,942,194 + +0.4 2,942,195 + +0.4 2,942,195 + +1.5 2,942,203 - +1.0 2,942,225 - +0.5 2,942,225 - -0.2 2,942,243 + +1.2 2,942,251 - -1.5 2,942,251 - -0.3 2,942,251 - +0.0 2,942,264 + +0.4 2,942,264 + +0.7 2,942,277 - -0.1 2,942,283 - -2.2 2,942,355 + CCNA_02784 0.12 +0.3 2,942,393 - CCNA_02784 0.16 +1.1 2,942,402 + CCNA_02784 0.17 +1.7 2,942,406 + CCNA_02784 0.18 +0.4 2,942,427 - CCNA_02784 0.20 +0.4 2,942,436 + CCNA_02784 0.21 -0.6 2,942,440 - CCNA_02784 0.22 -0.9 2,942,447 + CCNA_02784 0.23 +0.2 2,942,487 + CCNA_02784 0.27 -2.1 2,942,492 + CCNA_02784 0.28 -1.0 2,942,495 - CCNA_02784 0.28 -0.1 2,942,495 - CCNA_02784 0.28 -1.2 2,942,687 + CCNA_02784 0.51 -0.8 2,942,700 - CCNA_02784 0.53 +1.2 2,942,714 + CCNA_02784 0.54 -0.6 2,942,717 - CCNA_02784 0.55 -0.8 2,942,763 + CCNA_02784 0.60 +0.1 2,942,763 + CCNA_02784 0.60 -0.5 2,942,763 + CCNA_02784 0.60 -1.1 2,942,763 + CCNA_02784 0.60 -2.3 2,942,763 + CCNA_02784 0.60 +0.2 2,942,763 + CCNA_02784 0.60 -0.1 2,942,771 - CCNA_02784 0.61 -0.4 2,942,806 - CCNA_02784 0.65 -2.8 2,942,826 + CCNA_02784 0.68 -0.3 2,942,835 + CCNA_02784 0.69 +1.6 2,942,848 - CCNA_02784 0.70 +0.7 2,942,848 - CCNA_02784 0.70 -0.8 2,942,853 + CCNA_02784 0.71 +0.1 2,942,855 - CCNA_02784 0.71 -2.7 2,942,888 + CCNA_02784 0.75 +0.4 2,942,888 + CCNA_02784 0.75 +0.4 2,942,888 + CCNA_02784 0.75 +0.6 2,942,959 + CCNA_02784 0.84 -1.2 2,942,989 + CCNA_02784 0.87 +0.1 2,942,989 + CCNA_02784 0.87 -0.8 2,942,997 - CCNA_02784 0.88 +0.5 2,943,020 + +0.2 2,943,039 + +0.8 2,943,061 - +0.6 2,943,061 - +0.8 2,943,061 - +1.1 2,943,081 + +0.9 2,943,098 + -0.4 2,943,098 + -0.4 2,943,099 + -0.6 2,943,117 - +1.1 2,943,122 - +1.1 2,943,135 + +0.1 2,943,156 - -2.7 2,943,158 + +0.3 2,943,158 + +1.1 2,943,158 + -0.6 2,943,158 + +1.1 2,943,166 - -1.1 2,943,166 - +0.6 2,943,166 - -1.5 2,943,175 + +0.1 2,943,183 - -0.1 2,943,183 - +0.1 2,943,186 + -2.0 2,943,196 + +0.0 2,943,197 + +1.2 2,943,210 - CCNA_02785 0.11 -1.0 2,943,232 + CCNA_02785 0.14 +1.2 2,943,240 - CCNA_02785 0.15 -1.5 2,943,242 + CCNA_02785 0.15 -2.1 2,943,253 + CCNA_02785 0.16 -0.7 2,943,270 - CCNA_02785 0.18 -0.1 2,943,280 + CCNA_02785 0.19 -0.0 2,943,329 + CCNA_02785 0.24 +0.5 2,943,337 - CCNA_02785 0.25 +0.4 2,943,353 + CCNA_02785 0.27 -1.4 2,943,376 + CCNA_02785 0.29 +1.0 2,943,422 - CCNA_02785 0.34 +0.6 2,943,440 - CCNA_02785 0.36 -1.2 2,943,464 - CCNA_02785 0.39 -1.9 2,943,485 - CCNA_02785 0.41 +0.4 2,943,494 - CCNA_02785 0.42 -2.6 2,943,524 - CCNA_02785 0.46 +1.4 2,943,543 + CCNA_02785 0.48 -0.2 2,943,551 - CCNA_02785 0.49 -0.1 2,943,561 - CCNA_02785 0.50 -0.8 2,943,623 + CCNA_02785 0.56 +0.5 2,943,623 + CCNA_02785 0.56 +1.1 2,943,623 + CCNA_02785 0.56 -1.1 2,943,623 + CCNA_02785 0.56 -1.9 2,943,631 - CCNA_02785 0.57 -1.8 2,943,638 - CCNA_02785 0.58 +0.5 2,943,639 + CCNA_02785 0.58 +1.7 2,943,647 + CCNA_02785 0.59 +0.5 2,943,652 + CCNA_02785 0.60 -0.4 2,943,652 + CCNA_02785 0.60 -0.5 2,943,660 - CCNA_02785 0.60 -2.2 2,943,670 + CCNA_02785 0.62 -0.0 2,943,689 + CCNA_02785 0.64 -0.1 2,943,692 + CCNA_02785 0.64 -2.0 2,943,692 + CCNA_02785 0.64 +0.4 2,943,692 + CCNA_02785 0.64 -0.2 2,943,746 + CCNA_02785 0.70 -1.3 2,943,760 + CCNA_02785 0.71 -0.2 2,943,760 + CCNA_02785 0.71 +0.1 2,943,783 + CCNA_02785 0.74 -0.5 2,943,791 - CCNA_02785 0.75 -2.7 2,943,791 - CCNA_02785 0.75 +0.6 2,943,791 - CCNA_02785 0.75 +2.5 2,943,816 - CCNA_02785 0.77 -0.6 2,943,823 + CCNA_02785 0.78 -0.6 2,943,831 - CCNA_02785 0.79 -1.3 2,943,831 - CCNA_02785 0.79 +0.9 2,943,847 - CCNA_02785 0.81 -2.2 2,943,847 - CCNA_02785 0.81 +1.3 2,943,858 + CCNA_02785 0.82 +0.2 2,943,866 - CCNA_02785 0.83 -1.7 2,943,866 - CCNA_02785 0.83 +0.7 2,943,881 + CCNA_02785 0.85 +1.1 2,943,887 - CCNA_02785 0.85 -0.6 2,943,980 - -1.3 2,944,005 + +0.6 2,944,005 + -1.3 2,944,046 - -0.1 2,944,050 + -0.4 2,944,055 + -1.3 2,944,073 + -0.8 2,944,091 + +0.5
Or see this region's nucleotide sequence