Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02546 and CCNA_02547 overlap by 4 nucleotides CCNA_02547 and CCNA_02548 are separated by 121 nucleotides CCNA_02548 and CCNA_02549 overlap by 4 nucleotides
CCNA_02546: CCNA_02546 - GGDEF/response regulator protein PleD, at 2,694,580 to 2,695,944
_02546
CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318
_02547
CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087
_02548
CCNA_02549: CCNA_02549 - glucokinase, at 2,697,084 to 2,697,974
_02549
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2694.977 kb on + strand, within CCNA_02546 at 2694.984 kb on - strand, within CCNA_02546 at 2694.991 kb on + strand, within CCNA_02546 at 2694.999 kb on + strand, within CCNA_02546 at 2695.015 kb on - strand, within CCNA_02546 at 2695.027 kb on - strand, within CCNA_02546 at 2695.029 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.121 kb on + strand, within CCNA_02546 at 2695.126 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.129 kb on - strand, within CCNA_02546 at 2695.133 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.217 kb on + strand, within CCNA_02546 at 2695.225 kb on - strand, within CCNA_02546 at 2695.239 kb on - strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.250 kb on + strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.258 kb on - strand, within CCNA_02546 at 2695.292 kb on - strand, within CCNA_02546 at 2695.309 kb on + strand, within CCNA_02546 at 2695.309 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.345 kb on - strand, within CCNA_02546 at 2695.362 kb on + strand, within CCNA_02546 at 2695.378 kb on - strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.386 kb on + strand, within CCNA_02546 at 2695.414 kb on + strand, within CCNA_02546 at 2695.436 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.484 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.503 kb on - strand, within CCNA_02546 at 2695.527 kb on - strand, within CCNA_02546 at 2695.537 kb on + strand, within CCNA_02546 at 2695.584 kb on + strand, within CCNA_02546 at 2695.593 kb on - strand, within CCNA_02546 at 2695.609 kb on + strand, within CCNA_02546 at 2695.656 kb on + strand, within CCNA_02546 at 2695.685 kb on - strand, within CCNA_02546 at 2695.707 kb on - strand, within CCNA_02546 at 2695.751 kb on - strand, within CCNA_02546 at 2695.755 kb on + strand, within CCNA_02546 at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.820 kb on + strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.828 kb on - strand at 2695.833 kb on - strand at 2695.860 kb on + strand at 2695.862 kb on + strand at 2695.874 kb on + strand at 2695.875 kb on - strand at 2695.930 kb on + strand at 2695.930 kb on + strand at 2695.938 kb on - strand at 2695.938 kb on - strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.326 kb on - strand at 2696.326 kb on - strand at 2696.395 kb on + strand at 2696.400 kb on + strand at 2696.401 kb on - strand at 2696.403 kb on - strand at 2696.403 kb on - strand at 2696.448 kb on + strand at 2696.466 kb on + strand at 2696.471 kb on + strand at 2696.479 kb on - strand at 2696.484 kb on - strand at 2696.491 kb on + strand at 2696.491 kb on + strand at 2696.499 kb on - strand at 2696.518 kb on + strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.529 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.548 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.598 kb on + strand, within CCNA_02548 at 2696.618 kb on - strand, within CCNA_02548 at 2696.628 kb on - strand, within CCNA_02548 at 2696.692 kb on + strand, within CCNA_02548 at 2696.700 kb on - strand, within CCNA_02548 at 2696.705 kb on - strand, within CCNA_02548 at 2696.758 kb on + strand, within CCNA_02548 at 2696.781 kb on - strand, within CCNA_02548 at 2696.804 kb on + strand, within CCNA_02548 at 2696.819 kb on + strand, within CCNA_02548 at 2696.828 kb on + strand, within CCNA_02548 at 2696.835 kb on + strand, within CCNA_02548 at 2696.836 kb on + strand, within CCNA_02548 at 2696.844 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.860 kb on - strand, within CCNA_02548 at 2696.871 kb on - strand, within CCNA_02548 at 2696.872 kb on + strand, within CCNA_02548 at 2696.881 kb on - strand, within CCNA_02548 at 2696.888 kb on + strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.901 kb on - strand, within CCNA_02548 at 2696.991 kb on + strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.030 kb on - strand at 2697.030 kb on - strand at 2697.151 kb on + strand at 2697.221 kb on + strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.269 kb on - strand, within CCNA_02549 at 2697.303 kb on + strand, within CCNA_02549 at 2697.306 kb on - strand, within CCNA_02549
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,694,977 + CCNA_02546 0.29 +0.3 2,694,984 - CCNA_02546 0.30 -0.8 2,694,991 + CCNA_02546 0.30 -3.3 2,694,999 + CCNA_02546 0.31 -2.5 2,695,015 - CCNA_02546 0.32 +0.5 2,695,027 - CCNA_02546 0.33 -0.2 2,695,029 + CCNA_02546 0.33 -0.7 2,695,121 + CCNA_02546 0.40 +1.0 2,695,121 + CCNA_02546 0.40 -3.3 2,695,126 - CCNA_02546 0.40 +0.9 2,695,129 - CCNA_02546 0.40 +0.8 2,695,129 - CCNA_02546 0.40 +0.8 2,695,133 + CCNA_02546 0.41 +0.0 2,695,217 + CCNA_02546 0.47 -1.2 2,695,217 + CCNA_02546 0.47 -0.0 2,695,225 - CCNA_02546 0.47 +0.9 2,695,239 - CCNA_02546 0.48 +0.3 2,695,250 + CCNA_02546 0.49 -1.9 2,695,250 + CCNA_02546 0.49 +0.1 2,695,258 - CCNA_02546 0.50 +0.5 2,695,258 - CCNA_02546 0.50 +0.2 2,695,292 - CCNA_02546 0.52 +0.4 2,695,309 + CCNA_02546 0.53 +1.6 2,695,309 - CCNA_02546 0.53 +0.3 2,695,345 - CCNA_02546 0.56 +0.3 2,695,345 - CCNA_02546 0.56 +1.0 2,695,362 + CCNA_02546 0.57 -0.2 2,695,378 - CCNA_02546 0.58 +0.6 2,695,386 + CCNA_02546 0.59 -0.5 2,695,386 + CCNA_02546 0.59 -0.2 2,695,414 + CCNA_02546 0.61 +1.0 2,695,436 - CCNA_02546 0.63 +0.6 2,695,484 - CCNA_02546 0.66 +0.1 2,695,484 - CCNA_02546 0.66 +0.2 2,695,484 - CCNA_02546 0.66 +0.1 2,695,503 - CCNA_02546 0.68 +0.2 2,695,503 - CCNA_02546 0.68 -0.0 2,695,527 - CCNA_02546 0.69 -0.4 2,695,537 + CCNA_02546 0.70 -0.2 2,695,584 + CCNA_02546 0.74 +0.5 2,695,593 - CCNA_02546 0.74 +0.5 2,695,609 + CCNA_02546 0.75 +0.3 2,695,656 + CCNA_02546 0.79 +0.5 2,695,685 - CCNA_02546 0.81 +0.3 2,695,707 - CCNA_02546 0.83 +0.4 2,695,751 - CCNA_02546 0.86 -1.3 2,695,755 + CCNA_02546 0.86 +0.5 2,695,820 + +0.8 2,695,820 + -0.5 2,695,820 + +1.4 2,695,820 + +0.5 2,695,828 - +0.4 2,695,828 - +0.8 2,695,828 - +1.3 2,695,828 - -0.2 2,695,833 - +0.5 2,695,860 + +0.6 2,695,862 + -0.7 2,695,874 + -2.6 2,695,875 - -0.1 2,695,930 + -0.6 2,695,930 + +0.8 2,695,938 - -1.3 2,695,938 - +0.6 2,696,318 + -1.2 2,696,318 + +0.1 2,696,318 + -0.8 2,696,318 + +0.6 2,696,318 + +1.0 2,696,318 + -0.0 2,696,326 - +1.7 2,696,326 - -0.4 2,696,395 + -0.2 2,696,400 + +0.4 2,696,401 - +0.3 2,696,403 - +0.4 2,696,403 - +1.1 2,696,448 + +1.0 2,696,466 + +0.5 2,696,471 + -0.6 2,696,479 - -0.1 2,696,484 - +0.5 2,696,491 + -0.4 2,696,491 + -2.1 2,696,499 - -0.8 2,696,518 + CCNA_02548 0.12 +0.4 2,696,526 - CCNA_02548 0.13 +0.2 2,696,526 - CCNA_02548 0.13 -2.1 2,696,529 + CCNA_02548 0.14 -0.4 2,696,540 + CCNA_02548 0.15 -0.3 2,696,540 + CCNA_02548 0.15 +0.6 2,696,540 + CCNA_02548 0.15 +1.4 2,696,548 - CCNA_02548 0.17 +0.7 2,696,575 - CCNA_02548 0.21 +0.1 2,696,575 - CCNA_02548 0.21 -0.5 2,696,596 - CCNA_02548 0.24 -0.9 2,696,596 - CCNA_02548 0.24 -1.7 2,696,598 + CCNA_02548 0.24 +0.7 2,696,618 - CCNA_02548 0.27 -0.1 2,696,628 - CCNA_02548 0.29 -0.9 2,696,692 + CCNA_02548 0.39 +0.6 2,696,700 - CCNA_02548 0.40 -1.1 2,696,705 - CCNA_02548 0.41 -2.0 2,696,758 + CCNA_02548 0.49 -0.2 2,696,781 - CCNA_02548 0.53 -0.4 2,696,804 + CCNA_02548 0.56 +0.7 2,696,819 + CCNA_02548 0.58 +2.4 2,696,828 + CCNA_02548 0.60 -0.0 2,696,835 + CCNA_02548 0.61 +0.4 2,696,836 + CCNA_02548 0.61 +0.1 2,696,844 - CCNA_02548 0.62 -2.0 2,696,859 - CCNA_02548 0.65 -2.7 2,696,859 - CCNA_02548 0.65 -0.2 2,696,859 - CCNA_02548 0.65 -0.5 2,696,860 - CCNA_02548 0.65 -0.2 2,696,871 - CCNA_02548 0.67 -0.4 2,696,872 + CCNA_02548 0.67 -0.5 2,696,881 - CCNA_02548 0.68 -0.6 2,696,888 + CCNA_02548 0.69 +0.6 2,696,891 - CCNA_02548 0.70 +3.2 2,696,891 - CCNA_02548 0.70 -2.3 2,696,891 - CCNA_02548 0.70 -1.1 2,696,896 - CCNA_02548 0.70 -1.4 2,696,896 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 +0.7 2,696,896 - CCNA_02548 0.70 -0.2 2,696,896 - CCNA_02548 0.70 +0.8 2,696,896 - CCNA_02548 0.70 +0.3 2,696,901 - CCNA_02548 0.71 +0.4 2,696,991 + CCNA_02548 0.85 +0.9 2,697,007 - CCNA_02548 0.88 +0.1 2,697,007 - CCNA_02548 0.88 +0.1 2,697,030 - -0.6 2,697,030 - -0.4 2,697,151 + -0.4 2,697,221 + CCNA_02549 0.15 +0.3 2,697,244 - CCNA_02549 0.18 -1.7 2,697,244 - CCNA_02549 0.18 -2.3 2,697,267 + CCNA_02549 0.21 +0.4 2,697,267 + CCNA_02549 0.21 -2.3 2,697,267 + CCNA_02549 0.21 +0.4 2,697,269 - CCNA_02549 0.21 -0.1 2,697,303 + CCNA_02549 0.25 +1.4 2,697,306 - CCNA_02549 0.25 -1.5
Or see this region's nucleotide sequence