Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02273

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02271 and CCNA_02272 are separated by 68 nucleotidesCCNA_02272 and CCNA_02273 are separated by 34 nucleotidesCCNA_02273 and CCNA_02274 are separated by 125 nucleotidesCCNA_02274 and CCNA_02275 overlap by 4 nucleotides CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618 _02271 CCNA_02272: CCNA_02272 - hypothetical protein, at 2,424,687 to 2,424,929 _02272 CCNA_02273: CCNA_02273 - glutathione peroxidase, at 2,424,964 to 2,425,212 _02273 CCNA_02274: CCNA_02274 - EF-Hand domain protein, at 2,425,338 to 2,425,823 _02274 CCNA_02275: CCNA_02275 - ABC transporter, periplasmic component, at 2,425,820 to 2,426,605 _02275 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -2 -1 0 1at 2424.008 kb on + strand, within CCNA_02271at 2424.041 kb on + strand, within CCNA_02271at 2424.041 kb on + strand, within CCNA_02271at 2424.183 kb on - strand, within CCNA_02271at 2424.229 kb on - strand, within CCNA_02271at 2424.260 kb on + strand, within CCNA_02271at 2424.262 kb on + strand, within CCNA_02271at 2424.268 kb on - strand, within CCNA_02271at 2424.269 kb on + strand, within CCNA_02271at 2424.272 kb on + strand, within CCNA_02271at 2424.280 kb on - strand, within CCNA_02271at 2424.290 kb on - strand, within CCNA_02271at 2424.290 kb on - strand, within CCNA_02271at 2424.313 kb on + strand, within CCNA_02271at 2424.370 kb on - strand, within CCNA_02271at 2424.443 kb on + strand, within CCNA_02271at 2424.577 kb on - strandat 2424.648 kb on + strandat 2424.747 kb on + strand, within CCNA_02272at 2424.755 kb on - strand, within CCNA_02272at 2424.805 kb on - strand, within CCNA_02272at 2424.852 kb on + strand, within CCNA_02272at 2424.904 kb on - strand, within CCNA_02272at 2424.962 kb on + strandat 2425.006 kb on - strand, within CCNA_02273at 2425.248 kb on + strandat 2425.343 kb on - strandat 2425.576 kb on + strand, within CCNA_02274at 2425.576 kb on + strand, within CCNA_02274at 2425.584 kb on - strand, within CCNA_02274at 2425.584 kb on - strand, within CCNA_02274at 2425.649 kb on - strand, within CCNA_02274at 2425.740 kb on + strand, within CCNA_02274at 2425.746 kb on + strand, within CCNA_02274at 2425.772 kb on - strand, within CCNA_02274at 2425.782 kb on + strandat 2425.782 kb on + strandat 2425.782 kb on + strandat 2425.790 kb on + strandat 2425.790 kb on - strandat 2425.838 kb on + strandat 2425.856 kb on + strandat 2426.013 kb on - strand, within CCNA_02275at 2426.015 kb on + strand, within CCNA_02275at 2426.020 kb on + strand, within CCNA_02275at 2426.075 kb on + strand, within CCNA_02275at 2426.120 kb on + strand, within CCNA_02275at 2426.120 kb on - strand, within CCNA_02275at 2426.127 kb on + strand, within CCNA_02275at 2426.128 kb on - strand, within CCNA_02275at 2426.191 kb on + strand, within CCNA_02275at 2426.192 kb on + strand, within CCNA_02275at 2426.193 kb on + strand, within CCNA_02275at 2426.195 kb on - strand, within CCNA_02275at 2426.199 kb on - strand, within CCNA_02275at 2426.199 kb on - strand, within CCNA_02275at 2426.199 kb on - strand, within CCNA_02275

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,424,008 + CCNA_02271 0.22 +0.3
2,424,041 + CCNA_02271 0.26 +0.3
2,424,041 + CCNA_02271 0.26 +0.6
2,424,183 - CCNA_02271 0.45 -1.2
2,424,229 - CCNA_02271 0.50 +0.8
2,424,260 + CCNA_02271 0.54 -1.9
2,424,262 + CCNA_02271 0.55 +0.7
2,424,268 - CCNA_02271 0.55 +1.2
2,424,269 + CCNA_02271 0.55 +0.4
2,424,272 + CCNA_02271 0.56 -1.2
2,424,280 - CCNA_02271 0.57 -1.8
2,424,290 - CCNA_02271 0.58 +0.5
2,424,290 - CCNA_02271 0.58 -1.2
2,424,313 + CCNA_02271 0.61 -1.0
2,424,370 - CCNA_02271 0.68 +0.1
2,424,443 + CCNA_02271 0.78 -2.0
2,424,577 - +0.8
2,424,648 + -1.3
2,424,747 + CCNA_02272 0.25 -1.5
2,424,755 - CCNA_02272 0.28 +0.2
2,424,805 - CCNA_02272 0.49 -1.2
2,424,852 + CCNA_02272 0.68 -0.7
2,424,904 - CCNA_02272 0.89 +1.5
2,424,962 + -0.9
2,425,006 - CCNA_02273 0.17 -0.7
2,425,248 + -1.4
2,425,343 - +0.0
2,425,576 + CCNA_02274 0.49 -0.0
2,425,576 + CCNA_02274 0.49 -0.4
2,425,584 - CCNA_02274 0.51 +1.0
2,425,584 - CCNA_02274 0.51 +0.9
2,425,649 - CCNA_02274 0.64 +0.5
2,425,740 + CCNA_02274 0.83 -0.8
2,425,746 + CCNA_02274 0.84 -0.1
2,425,772 - CCNA_02274 0.89 -1.2
2,425,782 + +0.2
2,425,782 + -1.6
2,425,782 + +1.0
2,425,790 + +0.4
2,425,790 - -0.6
2,425,838 + +0.4
2,425,856 + -2.1
2,426,013 - CCNA_02275 0.25 +0.9
2,426,015 + CCNA_02275 0.25 -0.7
2,426,020 + CCNA_02275 0.25 -1.1
2,426,075 + CCNA_02275 0.32 +0.6
2,426,120 + CCNA_02275 0.38 -1.7
2,426,120 - CCNA_02275 0.38 +1.6
2,426,127 + CCNA_02275 0.39 +0.1
2,426,128 - CCNA_02275 0.39 +0.1
2,426,191 + CCNA_02275 0.47 -0.1
2,426,192 + CCNA_02275 0.47 +0.3
2,426,193 + CCNA_02275 0.47 -0.2
2,426,195 - CCNA_02275 0.48 -0.1
2,426,199 - CCNA_02275 0.48 -1.1
2,426,199 - CCNA_02275 0.48 -0.6
2,426,199 - CCNA_02275 0.48 +1.2

Or see this region's nucleotide sequence