Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02069

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02067 and CCNA_02068 are separated by 95 nucleotidesCCNA_02068 and CCNA_02069 overlap by 1 nucleotidesCCNA_02069 and CCNA_02070 are separated by 0 nucleotides CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416 _02067 CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865 _02068 CCNA_02069: CCNA_02069 - protein translocase subunit secF, at 2,219,865 to 2,220,830 _02069 CCNA_02070: CCNA_02070 - protein translocase subunit secD, at 2,220,831 to 2,222,429 _02070 Position (kb) 2219 2220 2221Strain fitness (log2 ratio) -1 0 1 2at 2218.866 kb on - strand, within CCNA_02067at 2218.902 kb on + strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.973 kb on - strand, within CCNA_02067at 2218.997 kb on + strand, within CCNA_02067at 2219.010 kb on - strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.049 kb on - strand, within CCNA_02067at 2219.073 kb on - strand, within CCNA_02067at 2219.075 kb on - strand, within CCNA_02067at 2219.126 kb on + strand, within CCNA_02067at 2219.153 kb on - strand, within CCNA_02067at 2219.249 kb on - strand, within CCNA_02067at 2219.368 kb on - strandat 2219.528 kb on + strandat 2219.554 kb on + strand, within CCNA_02068at 2219.562 kb on - strand, within CCNA_02068at 2219.588 kb on + strand, within CCNA_02068at 2219.627 kb on - strand, within CCNA_02068at 2219.654 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.724 kb on + strand, within CCNA_02068at 2220.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,218,866 - CCNA_02067 0.10 +2.1
2,218,902 + CCNA_02067 0.16 -0.3
2,218,904 - CCNA_02067 0.17 +1.8
2,218,904 - CCNA_02067 0.17 -0.0
2,218,973 - CCNA_02067 0.28 +1.5
2,218,997 + CCNA_02067 0.32 -0.4
2,219,010 - CCNA_02067 0.34 +0.7
2,219,018 + CCNA_02067 0.35 -0.4
2,219,018 + CCNA_02067 0.35 -1.0
2,219,049 - CCNA_02067 0.40 +0.8
2,219,073 - CCNA_02067 0.44 +1.5
2,219,075 - CCNA_02067 0.44 +0.8
2,219,126 + CCNA_02067 0.53 -0.7
2,219,153 - CCNA_02067 0.57 +0.3
2,219,249 - CCNA_02067 0.73 +0.7
2,219,368 - +0.9
2,219,528 + -0.2
2,219,554 + CCNA_02068 0.12 -0.2
2,219,562 - CCNA_02068 0.14 +1.3
2,219,588 + CCNA_02068 0.21 +0.7
2,219,627 - CCNA_02068 0.32 -0.5
2,219,654 + CCNA_02068 0.40 +0.1
2,219,659 + CCNA_02068 0.42 -1.0
2,219,659 + CCNA_02068 0.42 -1.4
2,219,724 + CCNA_02068 0.60 -0.8
2,220,821 - +0.7

Or see this region's nucleotide sequence